DN621152

Overview
NameDN621152
Unique NameDN621152
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621152 vs. ExPASy Swiss-Prot
Match: APO2_ARATH (APO protein 2, chloroplastic OS=Arabidopsis thaliana GN=APO2 PE=2 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 8.741e-64
Identity = 107/129 (82.95%), Postives = 120/129 (93.02%), Query Frame = -2
Query:  178 QVWEKMRGGARRLMMMYPVRVCGYCPEVHVGPSGHKAQNCGAFKHQQRNGQHGWQAAVLDDLIPPRYVWHVPDVNGPPLRREFKSFYGQAPAVVEICVQAGAAVPEQYKPTMRLDVGIPTSIREAEMVV 564
            Q WE+MR GA++LM MY VRVCGYCPEVHVGP+GHKAQNCGAFKHQQRNGQHGWQ+AVLDDLIPPRYVWHVPDVNGPP++RE +SFYGQAPAVVEIC QAGA VPE Y+ TMRL+VGIP+S++EAEMVV
Sbjct:  312 QAWEEMRAGAKKLMRMYRVRVCGYCPEVHVGPTGHKAQNCGAFKHQQRNGQHGWQSAVLDDLIPPRYVWHVPDVNGPPMQRELRSFYGQAPAVVEICAQAGAVVPEHYRATMRLEVGIPSSVKEAEMVV 440          

HSP 2 Score: 85.5001 bits (210), Expect = 2.333e-16
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = -2
Query:  223 RLMMMYPVRVCGYCPEVHVGPSGHKAQNCGAFKHQQRNGQHGWQAAVLDDLIPPRYVWHVPDVNGPPLRREFKSFYGQAPAVVEICVQAGAAVPE-----QYKPTMRL 531
            RLM +  V  CG+C E+HVGP GH  ++C      QR G H W  +V++D+I P   +H+ D  G  +R + +    + PAVVE+C+Q G  +PE     + KP +R+
Sbjct:  153 RLMKVVRVNACGWCNEIHVGPYGHPFKSCKGPNTSQRKGLHEWTNSVIEDVIVPLEAYHLFDRLGKRIRHDERFSIPRVPAVVELCIQGGVEIPEFPAKRRRKPIIRI 260          
BLAST of DN621152 vs. ExPASy Swiss-Prot
Match: APO1_ARATH (APO protein 1, chloroplastic OS=Arabidopsis thaliana GN=APO1 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.660e-38
Identity = 70/126 (55.56%), Postives = 94/126 (74.60%), Query Frame = -2
Query:  181 WEKMRGGARRLMMMYPVRVCGYCPEVHVGPSGHKAQNCGAFKHQQRNGQHGWQAAVLDDLIPPRYVWHVPDVNGPPLRREFKSFYGQAPAVVEICVQAGAAVPEQYKPTMRLDVGIPTSIREAEMV 558
            +EK+R G  +LM  + V+ CGYC EVHVGP GH  + CG FKHQ R+G+HGWQ A++D++ PP YVWHV D+ G PL    + FYG+APA+VEIC+ +GA VP++YK  MRLD+ +P S +EA+MV
Sbjct:  311 YEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSVKLCGEFKHQWRDGKHGWQDALVDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEICMHSGARVPQRYKAMMRLDIIVPDS-QEADMV 435          

HSP 2 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 35/104 (33.65%), Postives = 57/104 (54.81%), Query Frame = -2
Query:  247 WEKMRGGARRLMMMYPVRVCGYCPEVHVGPSGHKAQNCGAFKHQQRNGQHGWQAAVLDDLIPPRYVWHVPDVNGPPLRREFKSFYGQAPAVVEICVQAGAAVPE 558
            W+ +  G  +L+ + PV  C  C  VHV   GH  ++C    + QR G H W    ++D++ P   +H+ D  G  ++ E +  Y + PA+VE+C+QAG  +PE
Sbjct:  137 WKLLIKGLAQLLHVVPVFACSECGAVHVANVGHNIRDCNGPTNSQRRGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIPALVELCIQAGVEIPE 240          
BLAST of DN621152 vs. ExPASy Swiss-Prot
Match: APO3_ARATH (APO protein 3, mitochondrial OS=Arabidopsis thaliana GN=APO3 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.526e-34
Identity = 66/118 (55.93%), Postives = 79/118 (66.95%), Query Frame = -2
Query:  208 WEKMRGGARRLMMMYPVRVCGYCPEVHVGPSGHKAQNCGAFKHQQRNGQHGWQAAVLDDLIPPRYVWHVPD-VNGPPLRREFKSFYGQAPAVVEICVQAGAAVPEQYKPTMRLDVGIP 558
            W +M  G R+LM  Y V  CGYCPE+ VGP GHK + C A KHQ R+G H WQ A +DD++ P YVWHV D  +G  L    K FYG+APAV+E+CVQ GA VP+QY   MRLDV  P
Sbjct:  276 WFEMVLGVRKLMERYRVWTCGYCPEIQVGPKGHKVRMCKATKHQMRDGMHAWQEATIDDVVGPTYVWHVRDPTDGSVLDNSLKRFYGKAPAVIEMCVQGGAPVPDQYNSMMRLDVVYP 393          
BLAST of DN621152 vs. ExPASy Swiss-Prot
Match: APO4_ARATH (APO protein 4, mitochondrial OS=Arabidopsis thaliana GN=APO4 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 8.545e-27
Identity = 52/111 (46.85%), Postives = 74/111 (66.67%), Query Frame = -2
Query:  226 WEKMRGGARRLMMMYPVRVCGYCPEVHVGPSGHKAQNCGAFKHQQRNGQHGWQAAVLDDLIPPRYVWHVPDVNGPPLRREFKSFYGQAPAVVEICVQAGAAVPEQYKPTMR 558
            WEK+R G ++L+++YP +VC  C EVHVGPSGHKA+ CG FK++   G H W+ A ++DL+P + VWH    +   L  E +S+YG APA+V +C   GA VP +Y   M+
Sbjct:  210 WEKVRAGVKKLLLVYPSKVCKRCKEVHVGPSGHKARLCGVFKYESWRGTHYWEKAGVNDLVPEKMVWHRRPQDPVVLVDEGRSYYGHAPAIVSLCSHTGAIVPVKYACKMK 320          

HSP 2 Score: 72.0182 bits (175), Expect = 2.669e-12
Identity = 30/95 (31.58%), Postives = 55/95 (57.89%), Query Frame = -2
Query:  244 LMMMYPVRVCGYCPEVHVGPSGHKAQNCGAFKHQQRNGQHGWQAAVLDDLIPPRYVWHVPDVNGPPLRREFKSFYGQAPAVVEICVQAGAAVPEQ 528
            L+ ++PV  C +C EV VG  GH  + C ++  +  N  H W    ++D++ P   +H+ +++   +R + +  Y + PA++E+C QAGA  PE+
Sbjct:   79 LLKVFPVLTCKFCSEVFVGKEGHLIETCRSYIRRGNNRLHEWVPGSINDILVPVESYHLHNISQGVIRHQERFDYDRVPAILELCCQAGAIHPEE 173          
The following BLAST results are available for this feature:
BLAST of DN621152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
APO2_ARATH8.741e-6482.95APO protein 2, chloroplastic OS=Arabidopsis thalia... [more]
APO1_ARATH1.660e-3855.56APO protein 1, chloroplastic OS=Arabidopsis thalia... [more]
APO3_ARATH5.526e-3455.93APO protein 3, mitochondrial OS=Arabidopsis thalia... [more]
APO4_ARATH8.545e-2746.85APO protein 4, mitochondrial OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06F04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621152 ID=DN621152; Name=DN621152; organism=Citrus sinensis; type=EST; length=616bp
TTTTTTTTTTCAAGTTTAATTTTTCTACTTACAAGTCTTTAATATCTTCG
GTTCTGAATAAAACAAGAAATCGATGCAAGATATAGTTACAAGTTCATTG
CATTTCATTTCAATAAACCCCACTACAACTTTATATTTTGTTTTAAACAA
ACAATAATATGTGTACAAAGCAACTCAAACCACCATTTCAGCTTCTCGAA
TACTTGTAGGGATCCCAACATCTAATCTCATGGTTGGCTTGTATTGCTCT
GGCACTGCTGCCCCAGCCTGAACACATATTTCTACCACGGCAGGGGCTTG
TCCGTAAAAGCTTTTGAACTCCCGTCTTAACGGAGGCCCGTTCACATCAG
GAACATGCCAGACATATCTCGGCGGTATCAAGTCATCGAGAACTGCTGCT
TGCCAACCATGTTGGCCATTACGTTGTTGGTGCTTAAAGGCGCCGCAGTT
CTGCGCCTTGTGTCCAGATGGACCCACATGCACCTCTGGGCAATATCCAC
AAACCCTCACTGGGTACATCATCATTAGCCTCCTAGCTCCTCCCCGCATC
TTTTCCCATACTTGAAGTGTTTCTTCCGCAAGCAAAACTGTTTCTTCTTC
ATTGGATGGGGCTACT
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