DN621151

Overview
NameDN621151
Unique NameDN621151
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11582 contig Csv1_Contig11582:157..940. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621151 vs. ExPASy Swiss-Prot
Match: APO2_ARATH (APO protein 2, chloroplastic OS=Arabidopsis thaliana GN=APO2 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.446e-67
Identity = 117/182 (64.29%), Postives = 144/182 (79.12%), Query Frame = 2
Query:  236 RVPSKKLQHPYALAARQDYPQNADLPRQYSKREKKPFPIPIVELXXXXXXXXKNRSGQPRRPVPPPKRGLLVKNLIPVAYDVLNARITLINNLKKLWKVVPVHACVFCNEIHVGPVGHRFKSCKGPDSAFRKGLHEWTNAALEDILLQVEAYHLFDRLGKRIRHDERFSIPRIPAVTELCIQ 781
            RV   K +    L  R D PQN DLP+QY++REKKPFP+PIV+L        KN   +P+RP+PPPK G++VK+L+P+AY V NARI LINNL +L KVV V+AC +CNEIHVGP GH FKSCKGP+++ RKGLHEWTN+ +ED+++ +EAYHLFDRLGKRIRHDERFSIPR+PAV ELCIQ
Sbjct:   59 RVVLSKERRSLPLVVRNDRPQNEDLPKQYTRREKKPFPVPIVDLRRAARERVKNNKDKPKRPLPPPKNGMVVKSLVPLAYKVYNARIRLINNLHRLMKVVRVNACGWCNEIHVGPYGHPFKSCKGPNTSQRKGLHEWTNSVIEDVIVPLEAYHLFDRLGKRIRHDERFSIPRVPAVVELCIQ 240          

HSP 2 Score: 72.0182 bits (175), Expect = 4.137e-12
Identity = 48/169 (28.40%), Postives = 78/169 (46.15%), Query Frame = 2
Query:  305 DLPRQYSKREKKPFPIPIVELXXXXXXXXKNRSGQPRRPVPPPKRGLLVKNLIP---------VAYDVLNARITLINNLKKLWKVVPVHACVFCNEIHVGPVGHRFKSCKGPDSAFRKGLHEWTNAALEDILLQVEAYHLFDRLGKRIRHDERFSIPRIPAVTELCIQA 784
            ++P   +KR +KP  I I +         +    +P+ P  P    L V  + P         +A + L A   +    KKL ++  V  C +C E+HVGP GH+ ++C       R G H W +A L+D++     +H+ D  G  ++ + R    + PAV E+C QA
Sbjct:  244 EIPEFPAKRRRKPI-IRIGKSEFVDADETELPDPEPQPPPVPLLTELPVSEITPPSSEEETVSLAEETLQAWEEMRAGAKKLMRMYRVRVCGYCPEVHVGPTGHKAQNCGAFKHQQRNGQHGWQSAVLDDLIPPRYVWHVPDVNGPPMQRELRSFYGQAPAVVEICAQA 411          
BLAST of DN621151 vs. ExPASy Swiss-Prot
Match: APO1_ARATH (APO protein 1, chloroplastic OS=Arabidopsis thaliana GN=APO1 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.366e-36
Identity = 72/163 (44.17%), Postives = 97/163 (59.51%), Query Frame = 2
Query:  296 QNADLPRQYSKREKKPFPIPIVELXXXXXXXXKNRSGQPRRPVPPPKRGLLVKNLIPVAYDVLNARITLINNLKKLWKVVPVHACVFCNEIHVGPVGHRFKSCKGPDSAFRKGLHEWTNAALEDILLQVEAYHLFDRLGKRIRHDERFSIPRIPAVTELCIQA 784
            QN DLP    K +KKP+PIP  ++        K       + + PPK GLLV NL+PVA  V++    LI  L +L  VVPV AC  C  +HV  VGH  + C GP ++ R+G H W    + D+L+ VE+YH++D  G+RI+H+ RF   RIPA+ ELCIQA
Sbjct:   72 QNVDLPPILPKNKKKPYPIPFKQIQEEARKDKKLAQMGIEKQLDPPKNGLLVPNLVPVADQVIDNWKLLIKGLAQLLHVVPVFACSECGAVHVANVGHNIRDCNGPTNSQRRGSHSWVKGTINDVLIPVESYHMYDPFGRRIKHETRFEYERIPALVELCIQA 234          
BLAST of DN621151 vs. ExPASy Swiss-Prot
Match: APO3_ARATH (APO protein 3, mitochondrial OS=Arabidopsis thaliana GN=APO3 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.158e-30
Identity = 71/167 (42.51%), Postives = 97/167 (58.08%), Query Frame = 2
Query:  293 PQNADLPRQ-YSKREKKPFPIPIVELXXXXXXXXKNRSGQPRRPVP-PPKRGLLVKNLIPVAYDVLNARITLINNLKKLWKVVPVHACVFCNEIHVGPVGHRFKSCKGPDSAFRKGLHEWTNAALEDILLQVEAYHLFDRLGK-RIRHDERFSIPRIPAVTELCIQA 784
            P  AD+P+    K E+KP+P P+ EL        + R  QP R +  PP  GLLV  L+ VA+ V   R  L++ L K+   VPVH C  C E+H+G  GH  ++C GP S  R   H W    + D++L  + +HL+DR  K R+ HDERF++P+I AV ELCIQA
Sbjct:   41 PLYADVPKPPKDKSERKPYPTPMKELIRRAKEEKQLRKLQPCRVLEDPPDNGLLVPELVDVAHCVHRCRNMLLSGLSKIIHHVPVHRCRLCAEVHIGKQGHEIRTCTGPGSGSRSATHVWKRGRVSDVVLFPKCFHLYDRAVKPRVIHDERFTVPKISAVLELCIQA 207          
BLAST of DN621151 vs. ExPASy Swiss-Prot
Match: APO4_ARATH (APO protein 4, mitochondrial OS=Arabidopsis thaliana GN=APO4 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 7.522e-22
Identity = 51/112 (45.54%), Postives = 69/112 (61.61%), Query Frame = 2
Query:  449 VKNLIPVAYDVLNARITLINNLKKLWKVVPVHACVFCNEIHVGPVGHRFKSCKGPDSAFRKGLHEWTNAALEDILLQVEAYHLFDRLGKRIRHDERFSIPRIPAVTELCIQA 784
            VK ++PVA ++L AR  LI+N+  L KV PV  C FC+E+ VG  GH  ++C+         LHEW   ++ DIL+ VE+YHL +     IRH ERF   R+PA+ ELC QA
Sbjct:   55 VKEIVPVAEEILIARKNLISNIAALLKVFPVLTCKFCSEVFVGKEGHLIETCRSYIRRGNNRLHEWVPGSINDILVPVESYHLHNISQGVIRHQERFDYDRVPAILELCCQA 166          
The following BLAST results are available for this feature:
BLAST of DN621151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
APO2_ARATH3.446e-6764.29APO protein 2, chloroplastic OS=Arabidopsis thalia... [more]
APO1_ARATH5.366e-3644.17APO protein 1, chloroplastic OS=Arabidopsis thalia... [more]
APO3_ARATH1.158e-3042.51APO protein 3, mitochondrial OS=Arabidopsis thalia... [more]
APO4_ARATH7.522e-2245.54APO protein 4, mitochondrial OS=Arabidopsis thalia... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06F04_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621151 ID=DN621151; Name=DN621151; organism=Citrus sinensis; type=EST; length=784bp
GCCCCCCTATTTCTCTTCATTTTGACACTTGCAAAATTTTGTTCTGGGTC
TGCTAAAAGAAGTCCCATTTTGGTAAATGGATTTATTATCTTGTGGCAAA
GTAACAGTTTTCCCTCAACCCAAAGCGGGAACCTCCATTTTTACACGGAA
TTCACGACTTAACCTTCACTCAGGTCTTAGCTCTCTTCATTCTTTGAAGC
TTAGTAGCGGAAAATATAAACTTCAATTAAAGTCTAGAGTTCCATCGAAA
AAGTTGCAGCATCCATATGCTTTGGCTGCTAGACAGGATTATCCGCAAAA
TGCAGATTTACCTCGGCAGTACTCAAAGAGAGAAAAGAAGCCATTTCCAA
TTCCTATAGTGGAGCTGAGGCGAGCTGCTAGAGCAAGGGCCAAAAATCGG
AGTGGCCAACCCAGAAGACCAGTCCCACCTCCAAAAAGAGGGTTGCTGGT
TAAAAACCTTATACCAGTGGCCTATGATGTGTTAAATGCGAGAATTACAT
TGATTAACAATCTCAAGAAGCTCTGGAAAGTGGTGCCTGTGCATGCTTGC
GTATTTTGTAATGAAATTCACGTGGGACCTGTTGGACATCGTTTCAAGTC
ATGCAAAGGCCCTGATTCTGCCTTTCGCAAGGGTCTTCATGAGTGGACAA
ATGCAGCCCTTGAAGATATACTTTTGCAAGTTGAAGCATACCATCTTTTT
GACCGCCTAGGAAAGCGTATTCGTCATGATGAGAGATTTTCTATTCCTCG
AATTCCGGCTGTGACTGAGCTTTGCATCCAAGCT
back to top