DN621150 | Citrus Genome Database

Overview


Name	DN621150
Unique Name	DN621150
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	616

Libraries


Library Name	Type
Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6024	contig	Csv1_Contig6024:575..1190.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DN621150 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.079e-58
Identity = 64/76 (84.21%), Postives = 73/76 (96.05%), Query Frame = -2

Query:  205 ESFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGGNGTASTLPSKGETINVKDDSSVLKRIGCCS 432
            +SFAE+ESLYFMETSAL+ATNVENAFTEVLTQIY+IVSKRAVEAG +G++S LPSKG+TINVK+DSSVLKR GCCS
Sbjct:  142 KSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPSKGQTINVKEDSSVLKRFGCCS 217

HSP 2 Score: 115.161 bits (287), Expect = 9.079e-58
Identity = 53/63 (84.13%), Postives = 59/63 (93.65%), Query Frame = -3

Query:  426 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKA 614
            AYYRGAVGALLVYDVTR ATF+N  RWL+ELR+HTDPNI+VMLIGNK+DLRHLVAV TEDGK+
Sbjct:   81 AYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKS 143

[Close]

BLAST of DN621150 vs. ExPASy Swiss-Prot
Match: RAA1A_ARATH (Ras-related protein RABA1a OS=Arabidopsis thaliana GN=RABA1A PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.169e-54
Identity = 60/77 (77.92%), Postives = 70/77 (90.91%), Query Frame = -2

Query:  202 ESFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGGNGTASTLPSKGETINVKDDSSVLKRIGCCSN 432
            ++FAE+ESLYFMETSALDATNVENAFTEVLTQI+KIVSKR+V+ GG   ++ LP KGETINVK+D SVLKR+GCCSN
Sbjct:  142 KAFAERESLYFMETSALDATNVENAFTEVLTQIHKIVSKRSVDGGGE--SADLPGKGETINVKEDGSVLKRMGCCSN 216

HSP 2 Score: 114.39 bits (285), Expect = 1.169e-54
Identity = 53/63 (84.13%), Postives = 57/63 (90.48%), Query Frame = -3

Query:  426 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKA 614
            AYYRGAVGALL+YDVTRHATF+N  RWLRELR HTDPNI+VMLIGNK DLRHLVAV TE+ KA
Sbjct:   81 AYYRGAVGALLIYDVTRHATFENAARWLRELRGHTDPNIVVMLIGNKCDLRHLVAVKTEEAKA 143

[Close]

BLAST of DN621150 vs. ExPASy Swiss-Prot
Match: RB11E_LOTJA (Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.272e-53
Identity = 57/77 (74.03%), Postives = 68/77 (88.31%), Query Frame = -2

Query:  202 ESFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGGNGTASTLPSKGETINVKDDSSVLKRIGCCSN 432
            ++FAE+ESLYFMETSAL+ATNVENAF+EVLTQIY+IVSKRAVEAG   + S +PS+G+TINV +DSSVL R  CCSN
Sbjct:  142 KAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSKRAVEAGDRPSTSVVPSQGQTINVNEDSSVLNRYRCCSN 218

HSP 2 Score: 114.775 bits (286), Expect = 1.272e-53
Identity = 53/63 (84.13%), Postives = 58/63 (92.06%), Query Frame = -3

Query:  426 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKA 614
            AYYRGAVGALLVYDVTR  TF+  GRWL+ELR+HTDPNI+VMLIGNK+DLRHLV VSTEDGKA
Sbjct:   81 AYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGNKSDLRHLVTVSTEDGKA 143

[Close]

BLAST of DN621150 vs. ExPASy Swiss-Prot
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia GN=YPT3 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.153e-51
Identity = 51/62 (82.26%), Postives = 59/62 (95.16%), Query Frame = -3

Query:  429 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGK 614
            AYYRGAVGALLVYDVTRH T++NV RWL+ELR+HTDPNI+VMLIGNK+DLRHLVAVST++ K
Sbjct:   81 AYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAK 142

HSP 2 Score: 112.079 bits (279), Expect = 1.153e-51
Identity = 53/77 (68.83%), Postives = 63/77 (81.82%), Query Frame = -2

Query:  202 ESFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGGNGTASTLPSKGETINVKDDSSVLKRIGCCSN 432
            +  AE+E LYFMETSAL+ATNVENAFTE LTQIY+IVSK+AVEAG  G  S+ P KGETIN+KD+ S  K+ GCCS+
Sbjct:  142 KGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSSAPPKGETINIKDEGSSWKKFGCCSS 218

[Close]

BLAST of DN621150 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 9.607e-51
Identity = 52/63 (82.54%), Postives = 61/63 (96.83%), Query Frame = -3

Query:  426 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKA 614
            AYYRGAVGALLVYDVTRH+TF+NV RWL+ELR+HTDPNI+VML+GNK+DLRHLVAV T++GKA
Sbjct:   82 AYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKA 144

HSP 2 Score: 105.531 bits (262), Expect = 9.607e-51
Identity = 53/76 (69.74%), Postives = 65/76 (85.53%), Query Frame = -2

Query:  205 ESFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGGNGTASTLPSKGETINVKDDSSVLKRIGCCS 432
            ++FAE+ESLYFMETSAL++TNVENAF EVLTQIY+IVSKR+VEAG +  A + P KGE IN+KDD S +K+ GCCS
Sbjct:  143 KAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAGDD--AGSGPGKGEKINIKDDVSAVKKGGCCS 216

[Close]

BLAST of DN621150 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 6.670e-49
Identity = 51/63 (80.95%), Postives = 59/63 (93.65%), Query Frame = -3

Query:  426 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKA 614
            AYYRGAVGALLVYDVTR ATF+NV RWL+EL+ HTDPNI+VML+GNK+DLRHL+AV TEDGK+
Sbjct:   81 AYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHLLAVPTEDGKS 143

HSP 2 Score: 102.834 bits (255), Expect = 6.670e-49
Identity = 53/77 (68.83%), Postives = 63/77 (81.82%), Query Frame = -2

Query:  202 ESFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGGNGTASTLPSKGETINVKDDSSVLKRIGCCSN 432
            +S+AEQESL FMETSAL+ATNVE+AF EVLTQIY+I SK+ VEAG +G AS    KGE I VK+D S LK++GCCSN
Sbjct:  142 KSYAEQESLCFMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGEDGNASV--PKGEKIEVKNDVSALKKLGCCSN 216

[Close]

BLAST of DN621150 vs. ExPASy Swiss-Prot
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana GN=RABA1C PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.549e-47
Identity = 51/63 (80.95%), Postives = 58/63 (92.06%), Query Frame = -3

Query:  426 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKA 614
            AYYRGAVGALLVYDVTRH+TF+NV  WL+ELR HTDPNI+VML+GNK+DLRHLVAV TED K+
Sbjct:   81 AYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKS 143

HSP 2 Score: 97.4413 bits (241), Expect = 3.549e-47
Identity = 49/77 (63.64%), Postives = 63/77 (81.82%), Query Frame = -2

Query:  202 ESFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGGNGTASTLPSKGETINVKDDSSVLKRIGCCSN 432
            +SFAE+ESLYFMETSAL+ATNVENAF EVLTQI+ IVSK+A+EA     ++ +PSKG+ I++  D S +K+ GCCSN
Sbjct:  142 KSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASE--SANVPSKGDKIDIGKDVSAVKKGGCCSN 216

[Close]

BLAST of DN621150 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.205e-44
Identity = 49/63 (77.78%), Postives = 57/63 (90.48%), Query Frame = -3

Query:  426 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKA 614
            AYYRGAVGAL+VYD+TRH TF+NV RWL+ELR+HTD NI++ML+GNK DLRHL AVSTED KA
Sbjct:   82 AYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKA 144

HSP 2 Score: 91.6633 bits (226), Expect = 1.205e-44
Identity = 47/78 (60.26%), Postives = 65/78 (83.33%), Query Frame = -2

Query:  202 ESFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGGNGTASTLPSKGETINV-KDDSSVLKRIGCCSN 432
            ++FAE+E+ +FMETSAL++ NVENAFTEVLT+IYK+V ++A+E G +  A  LP KG+TINV KDD S +K++GCCS+
Sbjct:  143 KAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGDDPAA--LP-KGQTINVGKDDVSAVKKVGCCSS 217

[Close]

BLAST of DN621150 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.533e-36
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = -3

Query:  426 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKA 614
            AYYRGAVGALLVYD+T+  TF NV RWLRELR+H D NI++M+ GNK+DL HL AVS +DG A
Sbjct:   80 AYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGA 142

HSP 2 Score: 75.0998 bits (183), Expect = 6.533e-36
Identity = 38/75 (50.67%), Postives = 53/75 (70.67%), Query Frame = -2

Query:  205 SFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGGNGTASTLPSKGETINVKDDSSVLKRIGCCS 429
            + +E+E L F+ETSAL+ATN+E AF  +LT+IY IVSK+A+ A      +++P +G TINV D S   K+ GCCS
Sbjct:  142 ALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVADTSGNTKK-GCCS 215

[Close]

BLAST of DN621150 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.513e-36
Identity = 45/63 (71.43%), Postives = 54/63 (85.71%), Query Frame = -3

Query:  426 AYYRGAVGALLVYDVTRHATFQNVGRWLRELREHTDPNIIVMLIGNKTDLRHLVAVSTEDGKA 614
            AYYRGAVGALLVYD+T+  TF NV RWLRELR+H D NI++M+ GNK+DL+HL AVS EDG+A
Sbjct:   80 AYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQA 142

HSP 2 Score: 71.633 bits (174), Expect = 8.513e-36
Identity = 38/76 (50.00%), Postives = 53/76 (69.74%), Query Frame = -2

Query:  205 ESFAEQESLYFMETSALDATNVENAFTEVLTQIYKIVSKRAVEAGGNGTASTLPSKGETINVKDDSSVLKRIGCCS 432
            ++ AE+E L F+ETSAL+A N+E AF  +LT+IY I+SK+A+ A     +S LP +G TINV  D+S  +R  CCS
Sbjct:  141 QALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAA--QEASSNLPGQGTTINVA-DASANQRRSCCS 213

The following BLAST results are available for this feature:

BLAST of DN621150 vs. ExPASy Swiss-Prot

BLAST of DN621150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180


Match Name	E-value	Identity	Description
RB11D_LOTJA	9.079e-58	84.21	Ras-related protein Rab11D OS=Lotus japonicus GN=R...	[more]
RAA1A_ARATH	1.169e-54	77.92	Ras-related protein RABA1a OS=Arabidopsis thaliana...	[more]
RB11E_LOTJA	1.272e-53	74.03	Ras-related protein Rab11E OS=Lotus japonicus GN=R...	[more]
YPT3_NICPL	1.153e-51	82.26	Ras-related protein YPT3 OS=Nicotiana plumbaginifo...	[more]
RIC2_ORYSJ	9.607e-51	82.54	Ras-related protein RIC2 OS=Oryza sativa subsp. ja...	[more]
RAA1B_ARATH	6.670e-49	80.95	Ras-related protein RABA1b OS=Arabidopsis thaliana...	[more]
RAA1C_ARATH	3.549e-47	80.95	Ras-related protein RABA1c OS=Arabidopsis thaliana...	[more]
RB11B_TOBAC	1.205e-44	77.78	Ras-related protein Rab11B OS=Nicotiana tabacum GN...	[more]
RB11C_LOTJA	6.533e-36	69.84	Ras-related protein Rab11C OS=Lotus japonicus GN=R...	[more]
RB2BV_BETVU	8.513e-36	71.43	Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS11_06F03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006F03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DN621150 ID=DN621150; Name=DN621150; organism=Citrus sinensis; type=EST; length=616bp
TTTTTTTCAGGTAATCAAATGAATTACACAAATGTTGGTTTTATTACAGA
CAATCTAGAGTTCTTTGAGAGAGGCCTTGTAGGAAAAATTCAAAACAGTT
TACCAGACGGTAGTTTTTCATTTTACACAAAGATTACTTTGATCATGTAC
AAGTAAATTGCCCAATGCTGTAAAATCTAGTAACCGAATAAAATCTCCCT
AGTTTGAGCAGCATCCAATTCTCTTTAGAACGGATGAATCATCTTTGACA
TTTATCGTCTCTCCTTTAGATGGAAGTGTGGAAGCAGTTCCATTGCCGCC
TGCTTCAACTGCTCTCTTGCTCACGATCTTGTATATCTGAGTAAGAACCT
CAGTAAAAGCATTTTCCACATTGGTTGCATCCAATGCGGAAGTCTCCATG
AAATAGAGAGACTCCTGCTCAGCAAAGCTTTCCCATCCTCAGTTGAGACA
GCCACAAGGTGTCGAAGATCTGTCTTATTGCCAATGAGCATGACAATAAT
GTTCGGATCCGTGTGCTCTCTTAACTCCCTCAACCACCTTCCAACATTCT
GAAATGTAGCATGTCGTGTTACATCGTATACAAGCAAAGCACCAACGGCA
CCCCGGTAGTAAGCAC