DN621143

Overview
NameDN621143
Unique NameDN621143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1077 contig Csv1_Contig1077:160..875. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621143 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2)

HSP 1 Score: 269.626 bits (688), Expect = 1.153e-71
Identity = 136/159 (85.53%), Postives = 142/159 (89.31%), Query Frame = -2
Query:  239 CKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLATSKSKK 715
            CKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPFTRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS          ETQLA +KSKK
Sbjct:   15 CKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172          
BLAST of DN621143 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.967e-71
Identity = 135/159 (84.91%), Postives = 142/159 (89.31%), Query Frame = -2
Query:  239 CKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLATSKSKK 715
            CKARG+DLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPFTRFC GVGRTAQAKNRH NGQGRWP KSA+F+LDLLKNAESNAEVKGLDVDAL+ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL LS          ETQLA +KSKK
Sbjct:   15 CKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILSEKEEPVKKEPETQLA-AKSKK 172          
BLAST of DN621143 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 2.250e-67
Identity = 123/137 (89.78%), Postives = 130/137 (94.89%), Query Frame = -2
Query:  302 KARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 712
            KA G DLRVHFKNTRETA A+RKLPLTKAKRYLEDV+AHKQAIPF R+CGGVGRTAQAK+RH NGQGRWPVKSA+FILDLLKNAESNA+VKGLDVD LY+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL LS
Sbjct:   16 KAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILS 152          
BLAST of DN621143 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.905e-66
Identity = 121/137 (88.32%), Postives = 127/137 (92.70%), Query Frame = -2
Query:  302 KARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 712
            KA G DLRVHFKNTRETA A+RK+PL KAKRYLEDV+AHKQAIPF R+C GVGRTAQ KNR PNGQGRWP KSAKF+LDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS
Sbjct:   16 KAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152          
BLAST of DN621143 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.365e-64
Identity = 118/137 (86.13%), Postives = 126/137 (91.97%), Query Frame = -2
Query:  302 KARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 712
            KA G DLRVHFKNTRETA A+R++PL KAKRYLEDV+AHKQAIPF R+C GVGRTAQ KNR PNGQGRWP KSA+F+LDLLKNAESNAEVKGLDVD LYISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIEL LS
Sbjct:   16 KACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLLKNAESNAEVKGLDVDNLYISHIQVNQAQKQRRRTYRAHGRINPYMSNPCHIELILS 152          
BLAST of DN621143 vs. ExPASy Swiss-Prot
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.155e-53
Identity = 104/138 (75.36%), Postives = 117/138 (84.78%), Query Frame = -2
Query:  302 CKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 715
            CKARGS LRVHFKNTRETA AI+K+ + KA RYL+DV+A KQ IPF RFCGGVGR AQAK    + QGRWPVKSA+F+L LLKNAESNA+VKGLDVD+L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ +S
Sbjct:   15 CKARGSYLRVHFKNTRETAQAIKKMHIRKAYRYLKDVIAKKQIIPFRRFCGGVGRKAQAK-AFKHTQGRWPVKSAEFLLGLLKNAESNADVKGLDVDSLVIDHIQVNRAPYMRRRTYRAHGRINPYMSSPCHIEMIVS 151          
BLAST of DN621143 vs. ExPASy Swiss-Prot
Match: RL17_SUBDO (60S ribosomal protein L17 OS=Suberites domuncula GN=RPL17 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.264e-50
Identity = 99/138 (71.74%), Postives = 111/138 (80.43%), Query Frame = -2
Query:  305 CKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKN-RHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 715
            CKARG DLRVHFKNTRETA AI+ + L KA RYL DV+  KQ IPF RF GGVGR AQAKN + P  QGRWP KSA+F++ LL+NAESNAEVK L+ DAL I HIQVN+A   RRRTYRAHGRINPYM+SPCHIE+ L
Sbjct:   15 CKARGEDLRVHFKNTRETAQAIKGMHLKKALRYLNDVIEKKQIIPFRRFSGGVGRKAQAKNFKTPGSQGRWPKKSAQFLIQLLRNAESNAEVKMLNTDALVIDHIQVNRAAHLRRRTYRAHGRINPYMTSPCHIEMFL 152          
BLAST of DN621143 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3)

HSP 1 Score: 194.897 bits (494), Expect = 3.610e-49
Identity = 96/138 (69.57%), Postives = 113/138 (81.88%), Query Frame = -2
Query:  302 CKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 715
            CK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   15 CKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of DN621143 vs. ExPASy Swiss-Prot
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 194.897 bits (494), Expect = 3.610e-49
Identity = 96/138 (69.57%), Postives = 113/138 (81.88%), Query Frame = -2
Query:  302 CKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 715
            CK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   15 CKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of DN621143 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 194.512 bits (493), Expect = 4.714e-49
Identity = 96/138 (69.57%), Postives = 113/138 (81.88%), Query Frame = -2
Query:  302 CKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 715
            CK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   15 CKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
The following BLAST results are available for this feature:
BLAST of DN621143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL172_ARATH1.153e-7185.5360S ribosomal protein L17-2 OS=Arabidopsis thalian... [more]
RL171_ARATH1.967e-7184.9160S ribosomal protein L17-1 OS=Arabidopsis thalian... [more]
RL17_MAIZE2.250e-6789.7860S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=... [more]
RL171_HORVU1.905e-6688.3260S ribosomal protein L17-1 OS=Hordeum vulgare PE=... [more]
RL172_HORVU1.365e-6486.1360S ribosomal protein L17-2 OS=Hordeum vulgare PE=... [more]
RL17_PODCA3.155e-5375.3660S ribosomal protein L17 OS=Podocoryne carnea GN=... [more]
RL17_SUBDO4.264e-5071.7460S ribosomal protein L17 OS=Suberites domuncula G... [more]
RL17_HUMAN3.610e-4969.5760S ribosomal protein L17 OS=Homo sapiens GN=RPL17... [more]
RL17_FELCA3.610e-4969.5760S ribosomal protein L17 OS=Felis catus GN=RPL17 ... [more]
RL17_RAT4.714e-4969.5760S ribosomal protein L17 OS=Rattus norvegicus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06E24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006E24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621143 ID=DN621143; Name=DN621143; organism=Citrus sinensis; type=EST; length=716bp
TTTTTTTTTTTTTTTTTAAGCTTGAAAAGTCTTTAATTTTCATAAAGCTC
CAACAGTATGACTGAGGATTCTAACAAAACAGTAAACTGGACGTAATATG
AAATAAACAAAATATGATGTCTGATTTGACTAAATAACATCTCAGTCACT
ATTAAAGGTAAAAAAACTCACTTCATCAAGAACACAAAATAGAAAATCAG
GGCACTCTCCAATTGCTATGCTAAACCTCAGACAATTACTTCTTTGATTT
GCTAGTTGCCAACTGGGTCTCAGGCTCTTTCTTTACTGGCTCTTCCTTTT
CAGATAAGGTCAACTCAATATGGCAGGGAGAGGACATGTAAGGATTAATT
CTTCCATGAGCACGGTATGTGCGGCGCCTTTGCTTTTGTGCCTGGTTGAC
TTGGATGTGAGAAATGTAGAGTGCATCAACATCTAAACCTTTCACCTCAG
CATTACTCTCAGCATTCTTGAGCAAGTCAAGAATGAACTTTGCTGATTTG
ACAGGCCATCGTCCCTGTCCATTTGGATGCCTATTCTTTGCCTGAGCAGT
ACGTCCAACACCACCGCAGAATCGTGTGAAGGGAATGGCCTGTTTATGGG
CCATAACATCCTCCAAATACCTCTTAGCCTTCGTCAAAGGCAATTTCCTG
ATGGCATGGGCAGTTTCTCTCGTGTTCTTAAAATGAACCCTGAGATCAGA
GCCCCTGGCTTTGCAG
back to top