DN621127

Overview
NameDN621127
Unique NameDN621127
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12816 contig Csv1_Contig12816:401..1109. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621127 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.746e-63
Identity = 120/161 (74.53%), Postives = 139/161 (86.34%), Query Frame = -1
Query:  230 LFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRS-LKDKKK 709
            LF+L+EYHLLTL+CH +IVALAVLFLWSNA+ FI+KSPP+IPEV+IPEEP+LQLAS LR EINR  + LREIASGRD+KKFLS IAGLWV+SI+G   +FLTL YI  VLL TVP+ Y+KYED+VDS+ EKA AE+KKQYAV DAKV SKIPR  LKDKKK
Sbjct:  110 LFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKIPRGPLKDKKK 270          
BLAST of DN621127 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.032e-60
Identity = 117/161 (72.67%), Postives = 134/161 (83.23%), Query Frame = -1
Query:  230 LFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRS-LKDKKK 709
            +F+L+EYHLLTL+CH +IV LAVLFLWSNA+ FINKSPP+IPEV+IPEEP+LQLAS LR EINR F+ LREIASGRDLKKFL  IAGLWV+SI+G   NFLTL YI  VLL TVP+ Y+KYED+VD   EKA  E+KKQYAV D KVLSKIP   LK+KKK
Sbjct:  114 VFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSKIPLGPLKNKKK 274          
BLAST of DN621127 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.103e-57
Identity = 112/164 (68.29%), Postives = 129/164 (78.66%), Query Frame = -1
Query:  230 LFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVL----SKIPRSLKDKKK 709
            LF+L EYHLL  +CH  I ALA LFLWSNA TFI+KS P IPEV+IPE+P+LQL S LR EINR  TLLR IASG+D+KKF+ VIAGLWV+SI+GS  NFLTLFY   VLL T+PV+YEKYED+VD++ EKA  EIKKQYAV D KVL    SKIPR   +KKK
Sbjct:   93 LFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIPRGALNKKK 256          
BLAST of DN621127 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 6.119e-57
Identity = 113/151 (74.83%), Postives = 127/151 (84.11%), Query Frame = -1
Query:  257 LFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKI 709
            LF+LLEY+LLTL  H  I+ALAVLFLWS+ASTFI+KSP  IPEV+IPE+ VLQLAS LR EINR FT+LR+IASGRDLKKFL VIAGLWV+S VGS CNFLTL YI  VLL T+PV+YEKYED+VD F EKA  EIKKQY  FD KVLSK+
Sbjct:   89 LFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSKV 239          
BLAST of DN621127 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.835e-56
Identity = 104/161 (64.60%), Postives = 132/161 (81.99%), Query Frame = -1
Query:  230 LFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIP-RSLKDKKK 709
            LF+L+EYHLL+L+CH  I+AL  LFLWSNA T INK+ P+IPE+++PEE  L +AS+LR E+N+AF +LR IA GRDLKKFL V+ GLW++S+VG+W NFLTL YI FV+LHTVP++YEK+ED+VD  +EKA  E++KQY VFD KVLSKIP  SLK K K
Sbjct:   93 LFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLSKIPIASLKAKAK 253          
BLAST of DN621127 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.411e-53
Identity = 102/159 (64.15%), Postives = 127/159 (79.87%), Query Frame = -1
Query:  236 LFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIP-RSLKDK 709
            LF+L+EYH L+LVCH LI ALA LFL SNA  F+NK+PP+IPE++I EE  L + SALR E+N+AF +LR IA GRDLKKFL V+ GLW++S+VG+W NFLTL YI FV+LHTVP++YEK+ED+VD  +EK   E+KK Y VFD KVLSK+P  SLK K
Sbjct:   93 LFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLSKLPVASLKAK 251          
BLAST of DN621127 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.113e-41
Identity = 81/144 (56.25%), Postives = 108/144 (75.00%), Query Frame = -1
Query:  254 LLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIP 685
            LLT +C   I+ L + FLWSNA   +NKSP  + ++YIPE+P+LQ ASA+ FE+N AF  LR IA  RD+K F+  + GLW+VS++G+W +FL+L YI FVL+HTVP++YEKYED +D  +EKA  E+KK Y VF+AK LSKIP
Sbjct:  103 LLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEIDPIAEKAVIEMKKHYQVFEAKFLSKIP 243          
BLAST of DN621127 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.118e-33
Identity = 66/160 (41.25%), Postives = 101/160 (63.12%), Query Frame = -1
Query:  230 LFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSLKDKKK 709
            LF+ + +H L+LVC+ L++ +   F+WSNAS F+N+S  R+P + +P++   ++  A+  E+NR    L+++A   +LK+FL  + GLWV ++VGS CNFLT+ YI FV  HT+PV+YE+YED VD F +    +    Y   D   LS+IP      KK
Sbjct:   86 LFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLDTGFLSRIPSGKFGLKK 245          
BLAST of DN621127 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.532e-31
Identity = 67/160 (41.88%), Postives = 100/160 (62.50%), Query Frame = -1
Query:  233 LFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPR-SLKDKK 709
            L +++EY+ +TL+CH  + ++   F+WS AS F+N   P IPEV + E    QLA +     N+  T L ++A GRD   F      L++VSI+G++ NF+ L +I FV + T+PV+YE YED VD+ + K   ++KK Y   D  VLSKIPR ++K+KK
Sbjct:   64 LMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVLSKIPRGTVKNKK 223          
BLAST of DN621127 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.747e-22
Identity = 53/151 (35.10%), Postives = 84/151 (55.63%), Query Frame = -1
Query:  257 LFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKI 709
            LF+   Y     V +  ++++ +LFLW+ ++   N+  P++P + I EE V  +A A+R  IN    + REI  GR+ K+   V   LW VS VG++ NFLT+ Y+  VL   +P +YE+Y+D +D         I+ QY   D ++L KI
Sbjct:   39 LFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDERLLQKI 189          
The following BLAST results are available for this feature:
BLAST of DN621127 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RTNLB_ARATH9.746e-6374.53Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLA_ARATH2.032e-6072.67Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH2.103e-5768.29Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH6.119e-5774.83Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH8.835e-5664.60Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH1.411e-5364.15Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH2.113e-4156.25Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLH_ARATH2.118e-3341.25Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH7.532e-3141.88Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLJ_ARATH3.747e-2235.10Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06E14_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621127 ID=DN621127; Name=DN621127; organism=Citrus sinensis; type=EST; length=709bp
TTTTTTTTAATACTCACACATTATCCATGCAAATAGCTACGACATATGTA
GCATAAACAAGTACAAAATATCCATATTGTGAACCCAACCACCTCTAGAA
CAACAAAGGAATAAAACAGGGTTCAAGCCAACACTGGATAACAGTTTCAT
AACACCTAGATAAAATACTTTCTACCAAATGTGTGTCAGAACCTAGCAAA
GACCACAAATTTATACCACCATTCTAAGCCTTCTTCTTGTCCTTCAATGA
CCTCGGTATCTTACTTAAGACCTTGGCATCAAAGACTGCATACTGCTTCT
TGATCTCAGCCCATGCCTTCTCAGAAAATGAATCCACCCGATCCTCATAC
TTCTCATATATCACAGGCACAGTGTGAAGCAGTACAAAAACTATGTAGAA
CAAGGTCAAGAAATTGCACCAGCTCCCCACAATCGACACAACCCACAAGC
CAGCAATCACCGAGAGAAACTTCTTCAGATCTCTTCCAGATGCTATTTCC
CTCAGAAGAGTGAAGGCCCTATTGATCTCAAACCTAAGTGCAGAGGCCAA
CTGTAAAACTGGTTCCTCAGGGATATATACTTCCGGAATGCGTGGTGGAG
ACTTGTTAATGAAGGTGGAAGCATTAGACCACAAGAAAAGCACCGCAAGT
GCAACAATCAGGCAGTGACAGACAAGAGTTAGAAGGTGGTACTCAAGCAA
TTGAAACAG
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