DN621126

Overview
NameDN621126
Unique NameDN621126
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length796
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN621126_ssr441 microsatellite DN621126_ssr441:441..452. BLAST: Citrus ESTs to Prunus persica proteins V1
DN621126_ssr48 microsatellite DN621126_ssr48:48..79. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10964 contig Csv1_Contig10964:106..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN621126 vs. ExPASy Swiss-Prot
Match: COGT2_ARATH (Cytokinin-O-glucosyltransferase 2 OS=Arabidopsis thaliana GN=UGT85A1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.726e-13
Identity = 59/228 (25.88%), Postives = 100/228 (43.86%), Query Frame = 1 
Query:  154 HVLALPYPGRGHVNPMMNICKLLVSRQPDILITFVVT----EEWLGFIGSQSKP--HNIRFRTLPNTIP-SEHGRANDFAGFLEAVFTKMEAPFXXXXXXXXXXXXXQPPAAVTAIIADTYLPWVVDVGNRRNIPVASLWTMSALVFSVFHHFELLERDGHFPFD----LSEK--GDELVDCIPGLEPTKLADFPTIFHGAGRK--ILHAALQSASEVSKAQYLLLSS 792
            HV+ +PYP +GH+NPMM + KLL +R     +TFV T      +L   GS +     + RF ++ + +P ++     D     E+      APF              P   V+ I++D  + + +DV     +P    WT S   F  + HF L    G  P      L+++   D ++D IP ++  KL D P+          ++  AL+      +A  ++L++
Sbjct:   13 HVVCVPYPAQGHINPMMRVAKLLHAR--GFYVTFVNTVYNHNRFLRSRGSNALDGLPSFRFESIADGLPETDMDATQDITALCESTMKNCLAPFRELLQRINAGDNVPP---VSCIVSDGCMSFTLDVAEELGVPEVLFWTTSGCAFLAYLHFYLFIEKGLCPLKDESYLTKEYLEDTVIDFIPTMKNVKLKDIPSFIRTTNPDDVMISFALRETERAKRASAIILNT 235
The following BLAST results are available for this feature:
BLAST of DN621126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COGT2_ARATH1.726e-1325.88Cytokinin-O-glucosyltransferase 2 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06E13_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006E13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621126 ID=DN621126; Name=DN621126; organism=Citrus sinensis; type=EST; length=796bp
CACAACTAGCCACTCATTCTGTCTCTGCGTTTTACTCTTGCAAGCCACCA
GCCAGCCAGCCAGCCAGCCAGCCAGCCAGCTGAATTAGCTCCCATATATC
AAGTGGTACTCATGGATCCTCATCCTGCCCAAGTAAAACCAACCAGCCTC
TGCCACGTGCTGGCCCTGCCTTATCCCGGGAGAGGACACGTCAACCCCAT
GATGAACATTTGCAAGCTCTTAGTTTCAAGGCAGCCTGATATCCTCATCA
CCTTTGTTGTGACAGAAGAGTGGCTCGGATTCATTGGCTCACAGAGCAAG
CCCCATAACATTCGATTCCGTACATTGCCTAATACCATACCCTCAGAGCA
TGGGCGCGCCAATGACTTTGCCGGCTTCCTGGAGGCTGTGTTTACAAAGA
TGGAAGCTCCTTTTGAAGAGCTCCTTGATCGTCTGCTTCTTGATGATGAT
GAGCAACCTCCGGCGGCAGTGACTGCTATTATAGCAGATACTTACTTGCC
TTGGGTTGTTGACGTTGGCAACCGCAGGAACATTCCCGTAGCCTCCTTGT
GGACGATGTCTGCACTTGTGTTCTCTGTTTTTCATCACTTTGAGCTTCTT
GAAAGAGACGGCCATTTTCCGTTTGATCTCTCAGAAAAGGGAGACGAGCT
TGTGGACTGCATCCCAGGACTTGAACCGACGAAGTTGGCTGATTTTCCTA
CAATTTTTCACGGAGCTGGCAGAAAAATTTTGCATGCGGCCCTGCAAAGT
GCATCAGAGGTCTCAAAAGCTCAATATCTTCTGCTTTCTTCGGTCT
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