DN621123

Overview
NameDN621123
Unique NameDN621123
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN621123_ssr506 microsatellite DN621123_ssr506:506..517. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6022 contig Csv1_Contig6022:1..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621123 vs. ExPASy Swiss-Prot
Match: CHL1_ARATH (Nitrate/chlorate transporter OS=Arabidopsis thaliana GN=CHL1 PE=1 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.292e-60
Identity = 115/224 (51.34%), Postives = 152/224 (67.86%), Query Frame = 3
Query:   75 DFRGNPVDKAKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALGVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWRYGISAGTMVVAAAILLIG 746
            DF+G P D++KTGGW +A +IL  E  ER+  +GI +NLVTYL G +HL +A +A  VTNF+                   RYLT+AIFA++ A GV +LT +T IP +RPP+C+     H  C +A+G QL +LY ALY  ALG GG+K++VSGFGSDQFD ++PKE   M +FFNRF+F I++GSL AV VLVYVQD+VGR W YGI A  +V+A ++ L G
Sbjct:   17 DFQGRPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTNFLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIPGLRPPRCNPTTSSH--CEQASGIQLTVLYLALYLTALGTGGVKASVSGFGSDQFDETEPKERSKMTYFFNRFFFCINVGSLLAVTVLVYVQDDVGRKWGYGICAFAIVLALSVFLAG 238          
BLAST of DN621123 vs. ExPASy Swiss-Prot
Match: PTR3B_ARATH (Peptide transporter PTR3-B OS=Arabidopsis thaliana GN=PTR3-B PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.630e-40
Identity = 90/234 (38.46%), Postives = 133/234 (56.84%), Query Frame = 3
Query:   45 GEKDEAENVVDFRGNPVDKAKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALGVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWRYGISAGTMVVAAAILLIG 746
            G+    +  VD RGN V +++TG W A   ++  E+ ER+   GIS NLV Y+   LH  + KS+  VTN++                   RY+T  I +++  LG+ LLT + S+P ++PP+C     ++  C +A+  QLA+ + ALYT+A+G GG K N+S  G+DQFD  DPK++     FFN + F+I  G+ FA  VLVYVQDNVG    YG+S   +  +  I L+G
Sbjct:    7 GDDYTKDGTVDLRGNRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLLGMALLTLSVSLPGLKPPKCSTANVEN--CEKASVIQLAVFFGALYTLAIGTGGTKPNISTIGADQFDEFDPKDKIHKHSFFNWWMFSIFFGTFFATTVLVYVQDNVGWAIGYGLSTLGLAFSIFIFLLG 238          
BLAST of DN621123 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.643e-39
Identity = 92/235 (39.15%), Postives = 122/235 (51.91%), Query Frame = 3
Query:   48 EKD--EAENVVDFRGNPVDKAKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALGVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWRYGISAGTMVVAAAILLIG 746
            EKD    +  VD   NP +K KTG W A   ILG E  ER+   G+  NLV YL   L+  +A +A  VTN+                    RY T+A F  +   G+ LLT + S+P ++P  C+            N  Q A+ + ALY IALG GGIK  VS FG+DQFD +D  E+     FFN FYF+I++G+L A  VLV++Q NVG GW +G+    MV+A      G
Sbjct:    3 EKDVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPGLKPGNCNA------DTCHPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSSFFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFG 231          
BLAST of DN621123 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.391e-38
Identity = 91/226 (40.27%), Postives = 123/226 (54.42%), Query Frame = 3
Query:   72 VDFRGNPVDKAKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALGVGLLTSATSIPSMRPPQC-DDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWRYGISAGTMVVAAAILLIG 746
            VDF GNP  K KTG W A   ILG E  ER+   GI+ NL+TYL   LH  +  +AT VT +                    RY T+A F+ +  +G+  LT + S+P+++P +C  D+      C  A   Q AM +  LY IALG GGIK  VS FG+DQFD +D +E      FFN FYF+I+IG+L +  +LV++Q+N G G  +GI    M +A A    G
Sbjct:   30 VDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVPALKPAECIGDF------CPSATPAQYAMFFGGLYLIALGTGGIKPCVSSFGADQFDDTDSRERVRKASFFNWFYFSINIGALVSSSLLVWIQENRGWGLGFGIPTVFMGLAIASFFFG 249          
BLAST of DN621123 vs. ExPASy Swiss-Prot
Match: PTR3A_ARATH (Peptide transporter PTR3-A OS=Arabidopsis thaliana GN=PTR3-A PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.816e-38
Identity = 87/234 (37.18%), Postives = 131/234 (55.98%), Query Frame = 3
Query:   45 GEKDEAENVVDFRGNPVDKAKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALGVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWRYGISAGTMVVAAAILLIG 746
            G+    +  VD +GNPV ++  G W A   ++  E+ ER+   GIS NL  Y+   LH  + KS+  VTN++                   RY+T  I  ++   G+ +LT + +IP ++PP+C     ++  C +A+  QLA+ + ALYT+A+G GG K N+S  G+DQFD  DPKE+   + FFN + F+I  G+LFA  VLVYVQDNVG    YG+    + ++  I L+G
Sbjct:    7 GDDYTKDGTVDLQGNPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLHQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPGIKPPECSTTNVEN--CEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKTQKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLG 238          
BLAST of DN621123 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.879e-35
Identity = 83/228 (36.40%), Postives = 119/228 (52.19%), Query Frame = 3
Query:   63 ENVVDFRGNPVDKAKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALGVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSDPKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWRYGISAGTMVVAAAILLIG 746
            +  +D    P +K KTG W A   ILGTE  ER+   G+S NL+ YL   +++ +  ++  V+N+                    RY T+A F  +   G+ LLT + S+P + P  C        +   A   Q A+ + ALY IALG GGIK  VS FG+DQFD +D KE+++   FFN FYF I++G++ A  VLV++Q NVG GW  G+    M +A      G
Sbjct:   11 DGTLDIHKKPANKNKTGTWKACRFILGTECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTCYATPLIGAFIADAYLGRYWTIASFVVIYIAGMTLLTISASVPGLTPT-CSG------ETCHATAGQTAITFIALYLIALGTGGIKPCVSSFGADQFDDTDEKEKESKSSFFNWFYFVINVGAMIASSVLVWIQMNVGWGWGLGVPTVAMAIAVVFFFAG 231          
BLAST of DN621123 vs. ExPASy Swiss-Prot
Match: PTR2X_ARATH (Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.397e-22
Identity = 60/216 (27.78%), Postives = 107/216 (49.54%), Query Frame = 3
Query:   99 KAKTGGWLAAGLILGTELSERICAMGISMNLVTYLVGDLHLSSAKSATIVTNFMXXXXXXXXXXXXXXXXXXXRYLTVAIFASVTALGVGLLTSATSIPSMRPPQCDDYRRKHHQCIEANGKQLAMLYAALYTIALGGGGIKSNVSGFGSDQFDTSD-PKEEKAMIFFFNRFYFAISIGSLFAVIVLVYVQDNVGRGWRYGISAGTMVVAAAILLI 743
            K   GG +    I+  E  E++ + G+  N++ YL+ D     AK   ++  +                    R+LT++I +  + LG+ LL     +P ++P  CD      H C  +   QLA+LY+A   I++G GGI+     FG+DQ D  + PK E+ +  FF  +Y + ++  L A   +VY+Q+++G    +G+ A  M++AA + ++
Sbjct:   19 KKTKGGIITMPFIIANEAFEKVASYGLLPNMIMYLIRDYRFGVAKGTNVLFMWSAASNFTPLLGAFLSDSYLGRFLTISIASLSSFLGMVLLWLTAMLPQVKPSPCDPTAAGSH-CGSSTASQLALLYSAFALISIGSGGIRPCSLAFGADQLDNKENPKNERVLESFFGWYYASSAVAVLIAFTGIVYIQEHLGWKIGFGVPAVLMLIAALLFIL 233          
The following BLAST results are available for this feature:
BLAST of DN621123 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CHL1_ARATH1.292e-6051.34Nitrate/chlorate transporter OS=Arabidopsis thalia... [more]
PTR3B_ARATH9.630e-4038.46Peptide transporter PTR3-B OS=Arabidopsis thaliana... [more]
PTR1_ARATH1.643e-3939.15Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
PTR2_ARATH1.391e-3840.27Peptide transporter PTR2 OS=Arabidopsis thaliana G... [more]
PTR3A_ARATH1.816e-3837.18Peptide transporter PTR3-A OS=Arabidopsis thaliana... [more]
PTR5_ARATH1.879e-3536.40Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
PTR2X_ARATH1.397e-2227.78Probable peptide transporter At1g52190 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06E11_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621123 ID=DN621123; Name=DN621123; organism=Citrus sinensis; type=EST; length=746bp
TTCCCTTTTCCTTAATGCTTTAACAGGTCTTGGTTGCATCTCATGGTGAA
AAAGATGAAGCAGAAAATGTGGTGGATTTCAGAGGGAATCCTGTTGATAA
GGCCAAAACTGGTGGATGGCTAGCTGCAGGCCTCATCTTAGGAACTGAAC
TCTCTGAAAGAATATGTGCTATGGGCATATCAATGAACTTGGTGACATAT
TTGGTTGGCGATTTGCATTTATCATCGGCAAAATCTGCAACCATTGTCAC
CAACTTCATGGGAACACTAAATCTTCTCGGTCTGCTTGGTGGTTTCTTAG
CTGATGCAAAACTTGGCCGATACTTGACGGTCGCAATCTTTGCATCCGTC
ACTGCTTTGGGAGTGGGATTATTGACATCGGCCACAAGCATTCCTAGCAT
GAGGCCTCCTCAATGTGATGATTACAGAAGAAAGCATCATCAATGCATTG
AGGCAAACGGCAAGCAACTGGCTATGCTCTATGCAGCACTCTATACAATA
GCACTTGGTGGTGGTGGAATAAAATCTAATGTCTCAGGCTTTGGCTCTGA
CCAATTCGACACATCAGACCCCAAAGAAGAAAAGGCCATGATATTCTTCT
TTAACAGATTTTATTTTGCCATTAGCATAGGGTCTTTATTTGCTGTGATA
GTTTTGGTCTATGTGCAAGATAATGTTGGAAGAGGCTGGCGATATGGTAT
TTCAGCAGGGACTATGGTAGTTGCTGCAGCTATATTGCTAATTGGG
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