DN621116

Overview
NameDN621116
Unique NameDN621116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length770
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN621116_ssr32 microsatellite DN621116_ssr32:32..41. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12127 contig Csv1_Contig12127:599..1368. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621116 vs. ExPASy Swiss-Prot
Match: ARD3_ARATH (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 OS=Arabidopsis thaliana GN=ARD3 PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.833e-79
Identity = 131/154 (85.06%), Postives = 144/154 (93.51%), Query Frame = -3
Query:  307 LDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFLQKEAG 768
            LD+L+ELGVLSWRLDADNYETDE+LKKIRE RGYSYMDFCEVCPEKLPNYE K+K+FFEEHLHTDEEIRYCVAGSGYFDVRD NE WIR+WVKKGGMIVLPAG YHRFT+D+DNYIKAMRLFVG+PVWTP+NRPHDHLPARK Y+ NF++   G
Sbjct:   39 LDKLAELGVLSWRLDADNYETDEDLKKIRESRGYSYMDFCEVCPEKLPNYEVKVKSFFEEHLHTDEEIRYCVAGSGYFDVRDRNEAWIRVWVKKGGMIVLPAGIYHRFTVDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARKEYIDNFVKVNEG 192          
BLAST of DN621116 vs. ExPASy Swiss-Prot
Match: ARD2_ARATH (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Arabidopsis thaliana GN=ARD2 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.686e-77
Identity = 129/149 (86.58%), Postives = 141/149 (94.63%), Query Frame = -3
Query:  322 LDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFL 768
            LD+L+ELGVLSWRLDADNYETDE+LKKIRE RGYSYMDFCEVCPEKLPNYE K+K+FFEEHLHTDEEIRYCVAG+GYFDVRD NE WIR+ VKKGGMIVLPAG YHRFT+D+DNYIKAMRLFVG+PVWTP+NRPHDHLPARK YV NF+
Sbjct:   39 LDKLAELGVLSWRLDADNYETDEDLKKIRESRGYSYMDFCEVCPEKLPNYEVKVKSFFEEHLHTDEEIRYCVAGTGYFDVRDRNEAWIRVLVKKGGMIVLPAGIYHRFTVDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARKEYVDNFM 187          
BLAST of DN621116 vs. ExPASy Swiss-Prot
Match: ARD1_ARATH (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Arabidopsis thaliana GN=ARD1 PE=2 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 9.770e-75
Identity = 128/162 (79.01%), Postives = 144/162 (88.89%), Query Frame = -3
Query:  283 LDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFLQKEAGDSPINAAA 768
            LD+L+ELGVL WRLDADNYETDEELK+IRE RGYSYMD CEVCPEKLPNYEEK+K FFEEHLH DEEIRYC+AGSGYFDVRD N+ WIR+WVKKGG+IV PAG YHRFT+D+DNY+KAMRLFVG PVWT +NRPHDHLPARK Y++ FL K  GD  I+A+A
Sbjct:   39 LDKLAELGVLCWRLDADNYETDEELKRIRESRGYSYMDLCEVCPEKLPNYEEKVKMFFEEHLHIDEEIRYCLAGSGYFDVRDLNDIWIRVWVKKGGLIVFPAGIYHRFTVDSDNYMKAMRLFVGGPVWTAYNRPHDHLPARKAYMKKFL-KVIGDRNIDASA 199          
BLAST of DN621116 vs. ExPASy Swiss-Prot
Match: ARD2_ORYSJ (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Oryza sativa subsp. japonica GN=ARD2 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 5.927e-72
Identity = 120/151 (79.47%), Postives = 137/151 (90.73%), Query Frame = -3
Query:  316 LDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFLQK 768
            L +LSELG+LSWRL+AD++E DE LKKIRE RGYSYMD C+VCPEKLPNYE K+KNFFEEHLHTDEEIRYC+ GSGYFDVRD N++WIR+ VKKGGMIVLPAG YHRFTLD+DNYIKAMRLFVG+PVWTP+NRPHDHLPARK YV+  + +
Sbjct:   39 LSKLSELGILSWRLNADDWENDENLKKIREARGYSYMDICDVCPEKLPNYEAKLKNFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIRVAVKKGGMIVLPAGMYHRFTLDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARKEYVEKIINR 189          
BLAST of DN621116 vs. ExPASy Swiss-Prot
Match: ARD2_ORYSI (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Oryza sativa subsp. indica GN=ARD2 PE=2 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 5.927e-72
Identity = 120/151 (79.47%), Postives = 137/151 (90.73%), Query Frame = -3
Query:  316 LDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFLQK 768
            L +LSELG+LSWRL+AD++E DE LKKIRE RGYSYMD C+VCPEKLPNYE K+KNFFEEHLHTDEEIRYC+ GSGYFDVRD N++WIR+ VKKGGMIVLPAG YHRFTLD+DNYIKAMRLFVG+PVWTP+NRPHDHLPARK YV+  + +
Sbjct:   39 LSKLSELGILSWRLNADDWENDENLKKIREARGYSYMDICDVCPEKLPNYEAKLKNFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIRVAVKKGGMIVLPAGMYHRFTLDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARKEYVEKIINR 189          
BLAST of DN621116 vs. ExPASy Swiss-Prot
Match: ARD1_ORYSJ (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Oryza sativa subsp. japonica GN=ARD1 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 5.548e-70
Identity = 118/158 (74.68%), Postives = 138/158 (87.34%), Query Frame = -3
Query:  295 LDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFLQKEAGDSPI 768
            +D+L+ELGV+SWRL+ DN+E  E LK+IRE RGYSY+D C+VCPEKLPNYE KIK+FFEEHLHTDEEIRYC+ GSGYFDVRD N++WIRI +KKGGMIVLPAG YHRFTLDTDNYIKAMRLFVGDPVWTP+NRPHDHLPARK ++   L+ E  +  +
Sbjct:   39 VDKLTELGVISWRLNPDNWENCENLKRIREARGYSYVDICDVCPEKLPNYETKIKSFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIRIALKKGGMIVLPAGMYHRFTLDTDNYIKAMRLFVGDPVWTPYNRPHDHLPARKEFLAKLLKSEGENQAV 196          
BLAST of DN621116 vs. ExPASy Swiss-Prot
Match: ARD1_ORYSI (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Oryza sativa subsp. indica GN=ARD1 PE=1 SV=2)

HSP 1 Score: 264.233 bits (674), Expect = 5.548e-70
Identity = 118/158 (74.68%), Postives = 138/158 (87.34%), Query Frame = -3
Query:  295 LDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFLQKEAGDSPI 768
            +D+L+ELGV+SWRL+ DN+E  E LK+IRE RGYSY+D C+VCPEKLPNYE KIK+FFEEHLHTDEEIRYC+ GSGYFDVRD N++WIRI +KKGGMIVLPAG YHRFTLDTDNYIKAMRLFVGDPVWTP+NRPHDHLPARK ++   L+ E  +  +
Sbjct:   39 VDKLTELGVISWRLNPDNWENCENLKRIREARGYSYVDICDVCPEKLPNYETKIKSFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIRIALKKGGMIVLPAGMYHRFTLDTDNYIKAMRLFVGDPVWTPYNRPHDHLPARKEFLAKLLKSEGENQAV 196          
BLAST of DN621116 vs. ExPASy Swiss-Prot
Match: ARD4_ARATH (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 OS=Arabidopsis thaliana GN=ARD4 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.707e-61
Identity = 102/151 (67.55%), Postives = 122/151 (80.79%), Query Frame = -3
Query:  316 LDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFLQK 768
            LD L+ELGVL W+L+ +NYE D EL KIREDRGY YMD  ++CPEK+ NYEEK+KNFF EH+H DEEIRYC+AGSGYFDVRD +++WIRIW++ G +IVLPAG YHRFTLD  NYIK MRLFVG+PVWTP+NRP +  P RK Y+     K
Sbjct:   29 LDYLAELGVLYWKLNPENYENDSELSKIREDRGYDYMDLLDLCPEKVSNYEEKLKNFFTEHIHKDEEIRYCLAGSGYFDVRDKDDRWIRIWMQPGDLIVLPAGIYHRFTLDASNYIKLMRLFVGEPVWTPYNRPQEEHPVRKKYIHGLTYK 179          
BLAST of DN621116 vs. ExPASy Swiss-Prot
Match: MTND_BOVIN (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Bos taurus GN=ADI1 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 9.187e-57
Identity = 103/153 (67.32%), Postives = 122/153 (79.74%), Query Frame = -3
Query:  310 LDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFLQKEA 768
            L+QL  LGVL W+LDAD YE D EL+KIR++R YS++D   +  +KLPNYEEKIK FFEEHLH DEEIRY + GSGYFDVRD  ++WIRI ++KG MI LPAG YHRFTLD  NY+KAMRLFVGDPVWTP+NRP DHL AR  Y++ FL + A
Sbjct:   28 LEQLRRLGVLYWKLDADKYENDPELEKIRKERNYSWVDIITISKDKLPNYEEKIKMFFEEHLHLDEEIRYILDGSGYFDVRDQEDRWIRISMEKGDMITLPAGIYHRFTLDEKNYVKAMRLFVGDPVWTPYNRPSDHLEARTQYLE-FLAQSA 179          
BLAST of DN621116 vs. ExPASy Swiss-Prot
Match: ARD3_ORYSJ (Putative 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 OS=Oryza sativa subsp. japonica GN=ARD3 PE=3 SV=3)

HSP 1 Score: 220.32 bits (560), Expect = 9.187e-57
Identity = 98/146 (67.12%), Postives = 120/146 (82.19%), Query Frame = -3
Query:  331 LDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQ 768
            L +L +LG+++ RLDADN+E DE LK +RE RGY +MD  E+ PEK+PNYE  IK FFEEHLHTDEE+RYC+ GSGYFDVRD N+KW+R+ V+KG +IV+PAG YHRFTLDT+NYIK MRLF G P WT +NRPHDHLP RK Y++
Sbjct:   41 LAKLLDLGLVAMRLDADNHEHDENLKIMREQRGYLHMDIVELTPEKMPNYEVMIKRFFEEHLHTDEEVRYCLDGSGYFDVRDENDKWVRVSVRKGALIVVPAGIYHRFTLDTNNYIKTMRLFSGGPDWTAYNRPHDHLPERKKYLE 186          
The following BLAST results are available for this feature:
BLAST of DN621116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
ARD3_ARATH3.833e-7985.061,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD2_ARATH4.686e-7786.581,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD1_ARATH9.770e-7579.011,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD2_ORYSJ5.927e-7279.471,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD2_ORYSI5.927e-7279.471,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD1_ORYSJ5.548e-7074.681,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD1_ORYSI5.548e-7074.681,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD4_ARATH4.707e-6167.551,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
MTND_BOVIN9.187e-5767.321,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD3_ORYSJ9.187e-5767.12Putative 1,2-dihydroxy-3-keto-5-methylthiopentene ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06E08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621116 ID=DN621116; Name=DN621116; organism=Citrus sinensis; type=EST; length=770bp
CCCCTTTTTTTTGACACAAGCAGCAATCTACATATATATATTCAATATTA
GAATGTATTATAATATATATGGTACTCTTGCATACAGAAAATGAAGGACA
CAGATATTCATGGTGAGTTTACAGCAGTGGCTGCAACCAAGCAAGCAGAG
ATGCTACACAAGCAATTAAACCACACAGGTAACTCCAGGAGCCTCAGACA
CAGACAAACCATATAAACAGAAGTTTCTTTATTTATTAAAGCCAGTAGTA
TTGATCCAATGAGCAAGGAATTGCACAAATTACGCAGCAGCATTGATAGG
GCTGTCACCAGCTTCCTTCTGCAAGAAATTTTGAACATATCCCTTCCTTG
CGGGTAAATGATCATGGGGACGGTTGAATGGAGTCCAAACGGGATCACCT
ACAAACAGACGCATAGCCTTGATATAGTTGTCTGTATCCAAAGTAAAGCG
ATGGTAACATCCAGCAGGTAAAACAATCATTCCTCCTTTCTTTACCCATA
TGCGAATCCATTTTTCATTATGGTCCCTGACATCAAAGTAACCACTTCCT
GCCACACAGTAACGGATCTCTTCATCTGTATGAAGATGTTCTTCGAAAAA
GTTTTTGATCTTCTCTTCATAATTTGGCAGTTTTTCTGGGCAAACCTCAC
AAAAGTCCATGTAAGAATATCCGCGATCTTCACGAATCTTCTTCAGTTCC
TCATCAGTTTCATAGTTATCAGCATCTAATCGCCAGCTGAGTACTCCAAG
TTCAGAAAGCTGGTCCAGGG
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