DN621104

Overview
NameDN621104
Unique NameDN621104
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN621104_ssr518 microsatellite DN621104_ssr518:518..529. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of DN621104 vs. ExPASy Swiss-Prot
Match: Y5370_ARATH (PAN domain-containing protein At5g03700 OS=Arabidopsis thaliana GN=At5g03700 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.040e-47
Identity = 103/203 (50.74%), Postives = 134/203 (66.01%), Query Frame = -3 
Query:    2 NSATRTHAIQFLIFFFVFINYLCSRTEAAAATSTQELLLGFKATPNPSVSSFQSLLNDTTDTFSLGFLRVNSNQLALAVIHLPSSKPLWLANSTQLAPWSDRIELSFNGSLVISGPHSRVFWSTTRAEGQRVVILNTSNLQIQKLDDPLSVVWQSFDFPTDTLVENQNFTSTMSLVSSNGLYSMRLGSNFIGLYAKFNDKSEQ 610
            NS TR      L+  FVF+ +        A     EL+ GF+A P+ S+ SFQ LL D+   FS GFLRVN ++L+LAV H   + PLW+ + T+ A WS + +L FNGSLVI  P SR+ WS T   G R+++ N SNLQ+ K      V W+SFDFP +TLVE+QNFTS M+LVS NGLYSMRLGS+FIGLYAK +++S+Q
Sbjct:    7 NSFTRV-----LLLLFVFLVFSHKWQRVNAVEPVLELVKGFEAKPDSSIDSFQPLLTDSNGNFSFGFLRVNGSRLSLAVTHPNLTDPLWVLDPTRSASWSHKTKLFFNGSLVIIDPSSRLEWS-THTNGDRLILRNDSNLQVVKTS--TFVEWESFDFPGNTLVESQNFTSAMALVSPNGLYSMRLGSDFIGLYAKVSEESQQ 201
The following BLAST results are available for this feature:
BLAST of DN621104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5370_ARATH5.040e-4750.74PAN domain-containing protein At5g03700 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06E01_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621104 ID=DN621104; Name=DN621104; organism=Citrus sinensis; type=EST; length=666bp
TTTGCTCTGACTTATCATTGAACTTTGCGTACAAACCGATGAAGTTGCTG
CCTAGGCGCATCGAATAAAGCCCATTTGATGAAACAAGAGACATAGTACT
TGTGAAATTTTGGTTTTCGACGAGGGTATCTGTGGGAAAGTCAAAACTTT
GCCAGACAACGGAGAGAGGGTCGTCGAGTTTCTGTATTTGCAAATTCGAG
GTGTTGAGAATCACAACCCTCTGACCTTCTGCCCTAGTAGTAGACCAAAA
CACCCTCGAGTGTGGACCTGATATTACAAGGCTGCCATTGAAGGAGAGTT
CAATGCGGTCCGACCAGGGAGCCAACTGAGTTGAGTTAGCTAGCCAGAGT
GGTTTAGAGGAGGGCAAGTGGATGACTGCGAGCGCGAGCTGGTTTGAGTT
GACTCGGAGGAACCCTAGTGAGAAAGTATCAGTTGTGTCGTTGAGAAGAG
ACTGAAACGACGAGACTGAAGGGTTTGGTGTTGCTTTGAAACCTAAGAGA
AGCTCTTGTGTTGACGTGGCGGCGGCGGCTTCAGTTCTTGAACAGAGATA
ATTTATAAAGACGAAGAAGAAGATCAGGAACTGAATTGCATGTGTACGAG
TCGCCGAGTTGGCTGATTTTTTCATATTGGATAAGAGAGAGATTGTGGAT
TGAGAGAAGTTCAAAA
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