DN621102

Overview
NameDN621102
Unique NameDN621102
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3575 contig Csv1_Contig3575:13..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621102 vs. ExPASy Swiss-Prot
Match: UCRI1_TOBAC (Cytochrome b-c1 complex subunit Rieske-1, mitochondrial (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.496e-36
Identity = 73/89 (82.02%), Postives = 81/89 (91.01%), Query Frame = 1
Query:  235 RAFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILNFVLSMSASKDVLA 501
            R FSS S++P ++  LVP +P TVAA+KNPTSKIVYDE+NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLIL FVLSMSASKDVLA
Sbjct:   44 RGFSSNSVSPAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLMRLLILKFVLSMSASKDVLA 132          
BLAST of DN621102 vs. ExPASy Swiss-Prot
Match: UCRI5_TOBAC (Cytochrome b-c1 complex subunit Rieske-5, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.224e-35
Identity = 74/98 (75.51%), Postives = 83/98 (84.69%), Query Frame = 1
Query:  208 LGPQFQLPCRAFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILNFVLSMSASKDVLA 501
            L  QF    R FSS S++P ++  LV  +PATVAA+KNP+SKIVYD+ NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLIL FVLSMSASKDVLA
Sbjct:   45 LASQFLDQFRGFSSNSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLA 142          
BLAST of DN621102 vs. ExPASy Swiss-Prot
Match: UCRI3_TOBAC (Cytochrome b-c1 complex subunit Rieske-3, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.224e-35
Identity = 74/98 (75.51%), Postives = 83/98 (84.69%), Query Frame = 1
Query:  208 LGPQFQLPCRAFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILNFVLSMSASKDVLA 501
            L  QF    R FSS S++P ++  LV  +PATVAA+KNP+SKIVYD+ NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLIL FVLSMSASKDVLA
Sbjct:   45 LASQFLDQFRGFSSNSVSPAHQTGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLA 142          
BLAST of DN621102 vs. ExPASy Swiss-Prot
Match: UCRI2_TOBAC (Cytochrome b-c1 complex subunit Rieske-2, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 4.210e-35
Identity = 72/89 (80.90%), Postives = 80/89 (89.89%), Query Frame = 1
Query:  235 RAFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILNFVLSMSASKDVLA 501
            R FSS S++  ++  LVP +P TVAA+KNPTSKIVYDE+NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLIL FVLSMSASKDVLA
Sbjct:   58 RGFSSNSVSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLA 146          
BLAST of DN621102 vs. ExPASy Swiss-Prot
Match: UCRI4_TOBAC (Cytochrome b-c1 complex subunit Rieske-4, mitochondrial OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.600e-34
Identity = 71/87 (81.61%), Postives = 79/87 (90.80%), Query Frame = 1
Query:  241 FSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILNFVLSMSASKDVLA 501
            FSS S++  ++  LVP +P TVAA+KNPTSKIVYDE+NHERYPPGDPSKRAFAYFVLTGGRFVYASL+RLLIL FVLSMSASKDVLA
Sbjct:   24 FSSNSVSHAHDMGLVPDLPPTVAAIKNPTSKIVYDEHNHERYPPGDPSKRAFAYFVLTGGRFVYASLVRLLILKFVLSMSASKDVLA 110          
BLAST of DN621102 vs. ExPASy Swiss-Prot
Match: UCRI_MAIZE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Zea mays PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 6.080e-34
Identity = 70/95 (73.68%), Postives = 83/95 (87.37%), Query Frame = 1
Query:  220 FQLPCRAFSS-ESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILNFVLSMSASKDVLA 501
            F +  R FSS E++ PRN+++ +  +PATVAAVKNP  K+VYDEYNHERYPPGDPSKRAFAYFVL+GGRF+YASL+RLL+L FVLSMSASKDVLA
Sbjct:   53 FFVASRGFSSTETVVPRNQDAGLADLPATVAAVKNPNPKVVYDEYNHERYPPGDPSKRAFAYFVLSGGRFIYASLLRLLVLKFVLSMSASKDVLA 147          
BLAST of DN621102 vs. ExPASy Swiss-Prot
Match: UCRI_SOLTU (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Solanum tuberosum GN=FES1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.037e-33
Identity = 70/89 (78.65%), Postives = 79/89 (88.76%), Query Frame = 1
Query:  235 RAFSSESLTPRNEESLVPGVPATVAAVKNPTSKIVYDEYNHERYPPGDPSKRAFAYFVLTGGRFVYASLIRLLILNFVLSMSASKDVLA 501
            R FSS S++P ++  LV  +PATVAA+KNP+SKIVYD+ NHERYPPGDPSKRAFAYFVLTGGRFVYAS +RLLIL FVLSMSASKDVLA
Sbjct:   51 RGFSSNSVSPAHQLGLVSDLPATVAAIKNPSSKIVYDDSNHERYPPGDPSKRAFAYFVLTGGRFVYASSVRLLILKFVLSMSASKDVLA 139          
The following BLAST results are available for this feature:
BLAST of DN621102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
UCRI1_TOBAC6.496e-3682.02Cytochrome b-c1 complex subunit Rieske-1, mitochon... [more]
UCRI5_TOBAC3.224e-3575.51Cytochrome b-c1 complex subunit Rieske-5, mitochon... [more]
UCRI3_TOBAC3.224e-3575.51Cytochrome b-c1 complex subunit Rieske-3, mitochon... [more]
UCRI2_TOBAC4.210e-3580.90Cytochrome b-c1 complex subunit Rieske-2, mitochon... [more]
UCRI4_TOBAC1.600e-3481.61Cytochrome b-c1 complex subunit Rieske-4, mitochon... [more]
UCRI_MAIZE6.080e-3473.68Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_SOLTU1.037e-3378.65Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06D24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006D24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621102 ID=DN621102; Name=DN621102; organism=Citrus sinensis; type=EST; length=502bp
GACCGATAACACCAATCGCCATTTCGAAGAGATAATCAGAGAGAGATTTT
GAAGATGTTGAGGGTCGCGGCGAGAAGGCTCTTATCACCATCCTCATCAT
CGTCATTGAGGCCCATGGCATCGTCTCGGAATATAATTAACGGCGCCGGT
TCATCGTCCTCCTCCAACGATGATTTCAGATCCAACGGCTTCTATGGCTC
CGGATATCTTGGACCTCAGTTTCAACTTCCTTGCCGAGCTTTTTCTTCTG
AGTCACTGACACCAAGAAATGAAGAAAGCCTGGTTCCAGGTGTTCCAGCA
ACAGTGGCAGCTGTTAAGAATCCCACTTCTAAGATAGTATATGATGAATA
CAATCATGAACGTTATCCTCCAGGTGACCCCAGCAAGCGGGCATTTGCCT
ACTTTGTCCTGACTGGTGGTAGGTTTGTGTACGCTTCACTCATCCGTCTA
CTTATCCTTAATTTTGTACTGAGCATGTCAGCGAGTAAGGATGTTCTTGC
TA
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