DN621100

Overview
NameDN621100
Unique NameDN621100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length531
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12117 contig Csv1_Contig12117:271..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621100 vs. ExPASy Swiss-Prot
Match: LE14B_PRUAR (LEC14B homolog OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.074e-42
Identity = 77/111 (69.37%), Postives = 89/111 (80.18%), Query Frame = -1
Query:  199 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRRRQ 531
            KHP DQS+ATY+GH VLRTLIRC+ SP YSTGQKYIYTGS D CVY+YDLV+G QVA L +H  PVRDCSWHP  PMLVSSSWDG + RWEFPG+ +  P L + R RR++
Sbjct:  363 KHPNDQSLATYRGHGVLRTLIRCYLSPAYSTGQKYIYTGSSDHCVYIYDLVTGAQVARLNHHEGPVRDCSWHPLYPMLVSSSWDGTIARWEFPGD-DQVPTLERPRARRKE 472          
BLAST of DN621100 vs. ExPASy Swiss-Prot
Match: LE14B_LITER (LEC14B protein OS=Lithospermum erythrorhizon PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 7.698e-41
Identity = 75/109 (68.81%), Postives = 92/109 (84.40%), Query Frame = -1
Query:  205 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEFPGNGEAAPPLNKKRIRR 531
            KHP D S ATYKGHSVL TLIRC+FSP YSTGQKYIYTGSHD+ VY+YDLV+G+QV+ L+YH + VRDCSWHP+ PMLVSSS+DG++V+WE+ GN EA    N +R++R
Sbjct:  365 KHPSDLSGATYKGHSVLCTLIRCYFSPDYSTGQKYIYTGSHDANVYIYDLVTGDQVSTLQYHKATVRDCSWHPNYPMLVSSSFDGEIVKWEYRGNDEAPVQGNNQRLQR 473          
BLAST of DN621100 vs. ExPASy Swiss-Prot
Match: DCA11_PONAB (DDB1- and CUL4-associated factor 11 OS=Pongo abelii GN=DCAF11 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 8.550e-24
Identity = 50/92 (54.35%), Postives = 65/92 (70.65%), Query Frame = -1
Query:  256 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 531
            K P D S+ TY+GH VL TLIRC FSP++STGQ++IY+G     V VYDL+SG  V  L  H + VRD SWHP +  +VSSSWDG++  W++
Sbjct:  421 KLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512          
BLAST of DN621100 vs. ExPASy Swiss-Prot
Match: DCA11_HUMAN (DDB1- and CUL4-associated factor 11 OS=Homo sapiens GN=DCAF11 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 8.550e-24
Identity = 50/92 (54.35%), Postives = 65/92 (70.65%), Query Frame = -1
Query:  256 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 531
            K P D S+ TY+GH VL TLIRC FSP++STGQ++IY+G     V VYDL+SG  V  L  H + VRD SWHP +  +VSSSWDG++  W++
Sbjct:  421 KLPGDSSLMTYRGHGVLHTLIRCRFSPIHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512          
BLAST of DN621100 vs. ExPASy Swiss-Prot
Match: DCA11_BOVIN (DDB1- and CUL4-associated factor 11 OS=Bos taurus GN=DCAF11 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.458e-23
Identity = 50/92 (54.35%), Postives = 64/92 (69.57%), Query Frame = -1
Query:  256 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 531
            K P D S+ TY+GH VL TLIRC FSP +STGQ++IY+G     V VYDL+SG  V  L  H + VRD SWHP +  +VSSSWDG++  W++
Sbjct:  421 KLPGDSSLMTYRGHGVLHTLIRCRFSPTHSTGQQFIYSGCSTGKVVVYDLLSGHVVKKLTTHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512          
BLAST of DN621100 vs. ExPASy Swiss-Prot
Match: DCA11_MOUSE (DDB1- and CUL4-associated factor 11 OS=Mus musculus GN=Dcaf11 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.905e-23
Identity = 50/92 (54.35%), Postives = 64/92 (69.57%), Query Frame = -1
Query:  256 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 531
            K P D S+ TY+GH VL TLIRC FSP +STGQ++IY+G     V VYDL+SG  V  L  H + VRD SWHP +  +VSSSWDG++  W++
Sbjct:  421 KLPGDSSLMTYRGHGVLHTLIRCRFSPAHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGNLRLWQY 512          
BLAST of DN621100 vs. ExPASy Swiss-Prot
Match: DCA11_RAT (DDB1- and CUL4-associated factor 11 OS=Rattus norvegicus GN=Dcaf11 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.488e-23
Identity = 50/92 (54.35%), Postives = 63/92 (68.48%), Query Frame = -1
Query:  256 KHPCDQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDGDVVRWEF 531
            K P D S+ TY+GH VL TLIRC FSP +STGQ++IY+G     V VYDL+SG  V  L  H + VRD SWHP +  +VSSSWDG +  W++
Sbjct:  421 KLPGDSSLMTYRGHGVLHTLIRCRFSPAHSTGQQFIYSGCSTGKVVVYDLLSGHIVKKLTNHKACVRDVSWHPFEEKIVSSSWDGSLRLWQY 512          
BLAST of DN621100 vs. ExPASy Swiss-Prot
Match: DCA11_CAEEL (DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis elegans GN=wdr-23 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.669e-19
Identity = 50/98 (51.02%), Postives = 64/98 (65.31%), Query Frame = -1
Query:  232 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG--DVVRWEFPGNGEAAP 519
            D SV T +GHSVL TL+R +FSP  STG++YIYTG     V VYD++SG     LK HT+ VR+C WHP++  +VSS+WDG   V  W+    G  AP
Sbjct:  427 DTSVMTLRGHSVLHTLVRANFSPE-STGRRYIYTGCARGEVVVYDIMSGTVSRRLKGHTAVVRECDWHPTENEIVSSAWDGVTTVWTWDERQEGVIAP 523          
BLAST of DN621100 vs. ExPASy Swiss-Prot
Match: DCA11_CAEBR (DDB1- and CUL4-associated factor 11 homolog OS=Caenorhabditis briggsae GN=wdr-23 PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 9.156e-18
Identity = 46/98 (46.94%), Postives = 61/98 (62.24%), Query Frame = -1
Query:  232 DQSVATYKGHSVLRTLIRCHFSPVYSTGQKYIYTGSHDSCVYVYDLVSGEQVAALKYHTSPVRDCSWHPSQPMLVSSSWDG--DVVRWEFPGNGEAAP 519
            D SV T +GHSVL TL+R  FSP  +TG+++IYTG     + VYD+V+G     LK H + VR+C WHP +  +VS+SWDG   V  W+    G  AP
Sbjct:  406 DTSVMTLRGHSVLHTLVRAKFSPE-NTGRRFIYTGCARGEIVVYDIVTGTVSRRLKGHQAVVRECDWHPQENEIVSTSWDGVTTVWTWDERAEGVIAP 502          
The following BLAST results are available for this feature:
BLAST of DN621100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
LE14B_PRUAR1.074e-4269.37LEC14B homolog OS=Prunus armeniaca PE=2 SV=1[more]
LE14B_LITER7.698e-4168.81LEC14B protein OS=Lithospermum erythrorhizon PE=2 ... [more]
DCA11_PONAB8.550e-2454.35DDB1- and CUL4-associated factor 11 OS=Pongo abeli... [more]
DCA11_HUMAN8.550e-2454.35DDB1- and CUL4-associated factor 11 OS=Homo sapien... [more]
DCA11_BOVIN1.458e-2354.35DDB1- and CUL4-associated factor 11 OS=Bos taurus ... [more]
DCA11_MOUSE1.905e-2354.35DDB1- and CUL4-associated factor 11 OS=Mus musculu... [more]
DCA11_RAT2.488e-2354.35DDB1- and CUL4-associated factor 11 OS=Rattus norv... [more]
DCA11_CAEEL1.669e-1951.02DDB1- and CUL4-associated factor 11 homolog OS=Cae... [more]
DCA11_CAEBR9.156e-1846.94DDB1- and CUL4-associated factor 11 homolog OS=Cae... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06D23_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006D23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621100 ID=DN621100; Name=DN621100; organism=Citrus sinensis; type=EST; length=531bp
CAGGAATTCTGTACAGCATACTGTGATCATAATCACATTATTGGACCATA
CCTTACAACACATTTTGTGATTTTGAAATGTGGAAGTCATTTTTGAGTAC
AAAAAGCCTCATATTTTAGCATATAAATTAACAGCATTTTCAACTGTCTT
TATTCATCACATCATAACATAAATAGTTTGCATGCATCACAAGTAAAACT
GTCTCCTCCGGATCCTCTTCTTGTTTAGAGGAGGAGCAGCTTCTCCATTA
CCCGGAAACTCCCACCTGACAACATCTCCATCCCAAGAAGAGCTAACAAG
CATTGGTTGACTTGGGTGCCAACTACAGTCTCTAACGGGTGAAGTATGGT
ACTTGAGTGCAGCAACTTGCTCACCACTCACCAGGTCATAAACATAAACA
CAAGAATCATGGGATCCAGTGTAGATATACTTTTGGCCAGTGCTGTATAC
AGGGGAAAAGTGGCACCGGATAAGAGTACGCAAGACAGAATGACCTTTAT
ACGTAGCAACGGATTGATCACATGGGTGTTT
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