DN621092

Overview
NameDN621092
Unique NameDN621092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8876 contig Csv1_Contig8876:466..1025. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN621092 vs. ExPASy Swiss-Prot
Match: GIGAN_ARATH (Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 5.694e-69
Identity = 130/180 (72.22%), Postives = 150/180 (83.33%), Query Frame = 2 
Query:    2 KLIVELMRIYDSPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSF----KSNIEQVERNGIHGSSLHYFNIDAINWQSDIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTISI 529
            K++VELMR +D PESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQP+L WG SGLA+ DGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRD ++ SS        +   E+NG++  S  +FN  +I+W++DI+ CL WEAHS L+T MP QFLD AA+ELGCTIS+
Sbjct:  992 KVLVELMRNHDRPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPVLAWGPSGLAVVDGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDIMNQSSIPIKVTPKLPTTEKNGMNSPSYRFFNAASIDWKADIQNCLNWEAHSLLSTTMPTQFLDTAARELGCTISL 1171
[Close]
BLAST of DN621092 vs. ExPASy Swiss-Prot
Match: GIGAN_ORYSJ (Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2)

HSP 1 Score: 236.113 bits (601), Expect = 8.805e-62
Identity = 119/177 (67.23%), Postives = 139/177 (78.53%), Query Frame = 2 
Query:    2 KLIVELMRIYDSPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSFKSN--IEQVERNGIHGSSLHYFNIDAINWQSDIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTIS 526
            KLI ELMR +DSPE+LVILASASDLLLRATDGMLVDGEACTLPQLELLE TARA+  I+ WG SG+++ADGLSNLLKCRL  TIRCLSHPSAHVRALS SVLRD L++    S+  I+   RNGI   +        INWQ+D+E+C+ WEAHSR ATG+ + FL  AAKELGC ++
Sbjct:  983 KLIAELMRNHDSPEALVILASASDLLLRATDGMLVDGEACTLPQLELLEVTARAVHLIVEWGDSGVSVADGLSNLLKCRLSTTIRCLSHPSAHVRALSMSVLRDILNSGQINSSKLIQGEHRNGIQSPTYQCLAASIINWQADVERCIEWEAHSRRATGLTLAFLTAAAKELGCPLT 1159
The following BLAST results are available for this feature:
BLAST of DN621092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GIGAN_ARATH5.694e-6972.22Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=... [more]
GIGAN_ORYSJ8.805e-6267.23Protein GIGANTEA OS=Oryza sativa subsp. japonica G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06D19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006D19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621092 ID=DN621092; Name=DN621092; organism=Citrus sinensis; type=EST; length=560bp
AAAACTTATTGTGGAGCTGATGAGAATTTATGACAGTCCAGAGTCACTGG
TAATATTGGCAAGCGCATCAGACCTGCTTCTACGTGCCACAGACGGGATG
CTTGTTGATGGTGAAGCTTGCACACTGCCACAACTTGAGTTACTGGAAGC
AACAGCTAGAGCAATTCAGCCCATCCTGCGGTGGGGAAAGTCTGGATTAG
CAATTGCAGATGGTCTTTCAAACCTTTTAAAGTGTCGTCTACCTGCAACG
ATCCGATGCCTTTCTCATCCAAGTGCCCATGTCCGTGCACTGAGCACTTC
AGTTCTTCGTGACTTTTTACATACCAGTTCGTTCAAATCAAATATTGAGC
AAGTAGAGAGAAATGGCATCCATGGGTCTTCGTTACACTACTTCAATATT
GATGCAATTAACTGGCAATCTGACATCGAAAAATGCTTAACTTGGGAAGC
CCATAGCCGACTTGCAACAGGAATGCCGATTCAGTTTCTTGATATCGCTG
CCAAGGAATTAGGTTGTACAATATCTATATGAAATAAAATAACCTACAGC
AGTCATTTGA
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