DN621081

Overview
NameDN621081
Unique NameDN621081
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621081 vs. ExPASy Swiss-Prot
Match: PUB29_ARATH (U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.469e-33
Identity = 81/212 (38.21%), Postives = 134/212 (63.21%), Query Frame = -2
Query:  119 DSKIGSIKILDSISLDNELKRRVLETENLLSALFDYLKLAE--DQALNDAILSILITLSVYRSVKAQLVEL-GMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLAL--SEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYK-DARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLG-KASGLGNYQTKTAHIMPY 733
            +SKI S+++LD IS D + K  + E + +L+ +   + + E  D +L +A LS LIT+S  + V+++L+    + +I   +L+++ T +   EKS+K+L  +++  EGRL +   +   C   VV++++KV  TA E AV ++W +C V++ D  V+E V  SNG+TKLL+V+QS    +VR+M  DL+KVL   +S L  Y+TKT HIMP+
Sbjct:  204 ESKIESVRVLDWISFDAKSKLMIAERDGVLTEMMKSISITESSDPSLIEASLSFLITISKSKRVRSKLIAAKAITKIKDILLTETLTNVAVTEKSLKLLETLSSKREGRLEICGDDNGRCVEGVVKKLLKVSTTATEHAVTILWCLCYVFREDKTVEETVERSNGVTKLLVVIQSNCSAMVRQMAKDLIKVLKFNSSALAAYETKTTHIMPF 415          
BLAST of DN621081 vs. ExPASy Swiss-Prot
Match: PUB28_ARATH (U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.725e-31
Identity = 75/205 (36.59%), Postives = 122/205 (59.51%), Query Frame = -2
Query:  119 KIGSIKILDSISLDNELKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKV--LGKASGLGNYQTKTAHIMPY 727
            KI    +L+ I++D E K  + + E L++ +   +    D +L +A LS+LI ++  + VK  L+   +V  LT +L+D  T +   EK +K+L  +++C EGR  + +   C   VV ++MKV   A E AV V+WS+C ++K+ + ++AV+  NG+TK+LL++QS     VR M  DL+KV  +   S L  Y+TKT HIMP+
Sbjct:  206 KIDCSAVLEFIAVDAESKLIIAKGEGLVTEIIKLISSDSDSSLIEANLSLLIAIASSKRVKLALIREKLVTKLTSLLTDPTTSVSVTEKCLKLLEAISSCKEGRSEICDGV-CVETVVNKLMKVSTAATEHAVTVLWSVCYLFKEKKAQDAVIRINGVTKILLLLQSNCSLTVRHMLTDLLKVFKVNSRSCLSVYETKTTHIMPF 409          
BLAST of DN621081 vs. ExPASy Swiss-Prot
Match: PUB27_ARATH (U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.159e-28
Identity = 76/208 (36.54%), Postives = 122/208 (58.65%), Query Frame = -2
Query:  119 KIGSIKILDSISLDNELKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQ--ILTVEKSIKMLSIVATCSEGRLAL-SEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKV--LGKASGLGNYQTKTAHIMPY 727
            KI    +L+ I++D E K  + E + L++ L   +    D +L ++ LS LI +S  + VK  L+   ++  +T++LSDS +   +   EK +K+L I+A+  EGR  +   +  C   VV+++MKV   A E AV V+WS+  ++K+ +  EAV + NG+TK+LL++QS     VR+M  DL+KV  +   S L  Y TKT HIMP+
Sbjct:  213 KIDCAGLLEFIAVDAESKLLIAERDGLITELMKSISKDSDLSLIESSLSCLIAISSPKRVKLNLLREKLIGDVTKLLSDSTSSLSVSVTEKCLKLLEILASTKEGRSEICGGDGECLKTVVKKLMKVSTAATEHAVTVLWSVSYLFKEDKALEAVTSVNGVTKILLLLQSNCSPAVRRMLTDLLKVFKVNSRSCLSAYDTKTTHIMPF 420          
The following BLAST results are available for this feature:
BLAST of DN621081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PUB29_ARATH8.469e-3338.21U-box domain-containing protein 29 OS=Arabidopsis ... [more]
PUB28_ARATH2.725e-3136.59U-box domain-containing protein 28 OS=Arabidopsis ... [more]
PUB27_ARATH2.159e-2836.54U-box domain-containing protein 27 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06D14_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006D14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621081 ID=DN621081; Name=DN621081; organism=Citrus sinensis; type=EST; length=734bp
CCCCTTTTTTTTTTTACATAATATGTTCATCTATGTCAATCAATGTTAAT
AATAAAAATCTCTTCCTCCCATATACAATTGGATCAAAATACAAAATCAA
TCATCGTTCATGACATCAATATGGCATAATATGAGCAGTCTTGGTTTGAT
AATTCCCCAATCCAGAGGCCTTGCCCAAAACCTTAACCAAATCTCCGCAC
ATTTTCCTCACAATCCCTTCATTTTCGCTCTGCATCACAAGCAGCAGTTT
GGTCAACCCATTGCTGTTGACCACGGCCTCTTTCACCCTCGCATCTTTGT
ACACGCAACACATGCTCCATATCACCACCACCGCATCCTCCCTCGCCGTT
TTGCCCACCTTCATCACTCTCTCCACCACTCTTCCCGCGCAACTCGCTTC
TTCGCTCAACGCCAAGCGCCCCTCGCTACACGTGGCAACTATCGATAACA
TTTTTATTGACTTTTCCACAGTCAGGATTTGTGTCCTCGAATCGGAGAGA
ATTCTTGTGAGGATTTGAACCATTCCGAGTTCGACGAGCTGAGCTTTGAC
CGAACGATAGACTGACAAAGTGATCAAGATTGATAAAATGGCGTCGTTTA
GAGCTTGATCCTCTGCTAGCTTGAGGTAATCGAACAGTGCGGAGAGGAGG
TTCTCTGTTTCCAAAACTCTGCGTTTCAATTCGTTGTCGAGTGAAATCGA
ATCTAGTATCTTAATCGATCCGATCTTTGAATCC
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