DN621056

Overview
NameDN621056
Unique NameDN621056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length498
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621056 vs. ExPASy Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 6.874e-67
Identity = 125/152 (82.24%), Postives = 135/152 (88.82%), Query Frame = 2
Query:   41 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAERARE 496
            MVSLKLQKRL+ASV+KCG+GKVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR+MK AK KGRHSGYGKRKGTREARLPTK+              KYRE+KKIDKHMYHDMYM+VKGNVFKNKRVLMESIHKSKAE+ARE
Sbjct:    1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKARE 152          
BLAST of DN621056 vs. ExPASy Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 8.978e-67
Identity = 125/152 (82.24%), Postives = 133/152 (87.50%), Query Frame = 2
Query:   41 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAERARE 496
            MVSLK+QKRL+ASV+KCG+GKVWLDPNE  +ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR + EAKRKGRHSGYGKRKGTREARLPTKI              KYRESKKID+HMYHDMYMKVKGNVFKNKRVLMESIHK KAE+ARE
Sbjct:    1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMKAEKARE 152          
BLAST of DN621056 vs. ExPASy Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 247.669 bits (631), Expect = 2.211e-65
Identity = 123/152 (80.92%), Postives = 134/152 (88.16%), Query Frame = 2
Query:   41 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAERARE 496
            MVSLKLQKRL++SVLKCG+ KVWLDPNE ++ISMANSRQNIRKLVKDGFIIRKPTKIHSRSRAR++  AKRKGRHSGYGKRKGTREARLPTK+              KYRE+KKID+HMYHDMYMKVKGNVFKNKRVLMESIHKSKAE+ARE
Sbjct:    1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKARE 152          
BLAST of DN621056 vs. ExPASy Swiss-Prot
Match: RL19_DROME (60S ribosomal protein L19 OS=Drosophila melanogaster GN=RpL19 PE=1 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 1.030e-54
Identity = 101/151 (66.89%), Postives = 119/151 (78.81%), Query Frame = 2
Query:   41 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAERAR 493
            M SLKLQKRL+ASVL+CG+ KVWLDPNE+NEI+  NSRQNIRKL+KDG II+KP  +HSR R R+  EA+RKGRH G+GKRKGT  AR+PTK+              KYR+SKKID+H+YHD+YMK KGNVFKNKRVLME IHK KAE+ R
Sbjct:    1 MSSLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSRYRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLYHDLYMKCKGNVFKNKRVLMEYIHKKKAEKQR 151          
BLAST of DN621056 vs. ExPASy Swiss-Prot
Match: RL19_XENLA (60S ribosomal protein L19 OS=Xenopus laevis GN=rpl19 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.065e-51
Identity = 97/152 (63.82%), Postives = 117/152 (76.97%), Query Frame = 2
Query:   41 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAERARE 496
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKLVKDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA++AR+
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKLSWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARK 152          
BLAST of DN621056 vs. ExPASy Swiss-Prot
Match: RL19_RAT (60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.065e-51
Identity = 96/152 (63.16%), Postives = 117/152 (76.97%), Query Frame = 2
Query:   41 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAERARE 496
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA++AR+
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARK 152          
BLAST of DN621056 vs. ExPASy Swiss-Prot
Match: RL19_PONAB (60S ribosomal protein L19 OS=Pongo abelii GN=RPL19 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.065e-51
Identity = 96/152 (63.16%), Postives = 117/152 (76.97%), Query Frame = 2
Query:   41 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAERARE 496
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA++AR+
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARK 152          
BLAST of DN621056 vs. ExPASy Swiss-Prot
Match: RL19_MOUSE (60S ribosomal protein L19 OS=Mus musculus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.065e-51
Identity = 96/152 (63.16%), Postives = 117/152 (76.97%), Query Frame = 2
Query:   41 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAERARE 496
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA++AR+
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARK 152          
BLAST of DN621056 vs. ExPASy Swiss-Prot
Match: RL19_MACFA (60S ribosomal protein L19 OS=Macaca fascicularis GN=RPL19 PE=2 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 1.065e-51
Identity = 96/152 (63.16%), Postives = 117/152 (76.97%), Query Frame = 2
Query:   41 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAERARE 496
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA++AR+
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARK 152          
BLAST of DN621056 vs. ExPASy Swiss-Prot
Match: RL19_HUMAN (60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.065e-51
Identity = 96/152 (63.16%), Postives = 117/152 (76.97%), Query Frame = 2
Query:   41 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAERARE 496
            M  L+LQKRL++SVL+CG+ KVWLDPNE NEI+ ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+              +YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA++AR+
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARK 152          
The following BLAST results are available for this feature:
BLAST of DN621056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL191_ARATH6.874e-6782.2460S ribosomal protein L19-1 OS=Arabidopsis thalian... [more]
RL192_ARATH8.978e-6782.2460S ribosomal protein L19-2 OS=Arabidopsis thalian... [more]
RL193_ARATH2.211e-6580.9260S ribosomal protein L19-3 OS=Arabidopsis thalian... [more]
RL19_DROME1.030e-5466.8960S ribosomal protein L19 OS=Drosophila melanogast... [more]
RL19_XENLA1.065e-5163.8260S ribosomal protein L19 OS=Xenopus laevis GN=rpl... [more]
RL19_RAT1.065e-5163.1660S ribosomal protein L19 OS=Rattus norvegicus GN=... [more]
RL19_PONAB1.065e-5163.1660S ribosomal protein L19 OS=Pongo abelii GN=RPL19... [more]
RL19_MOUSE1.065e-5163.1660S ribosomal protein L19 OS=Mus musculus GN=Rpl19... [more]
RL19_MACFA1.065e-5163.1660S ribosomal protein L19 OS=Macaca fascicularis G... [more]
RL19_HUMAN1.065e-5163.1660S ribosomal protein L19 OS=Homo sapiens GN=RPL19... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06C24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621056 ID=DN621056; Name=DN621056; organism=Citrus sinensis; type=EST; length=498bp
CTGATCGCGAGAGACAGAGGGGGAGAGAAGAGAAGGGAAAATGGTGTCGT
TGAAGTTACAGAAGCGGCTCTCCGCTAGCGTCCTCAAGTGCGGACGTGGC
AAGGTCTGGCTTGACCCTAATGAGGTCAACGAAATCTCCATGGCCAACTC
CAGGCAGAACATTAGGAAATTGGTGAAGGATGGTTTCATCATCAGGAAGC
CAACAAAGATCCACTCCCGTTCTCGCGCTCGCAGAATGAAGGAAGCCAAG
AGGAAGGGCCGTCACTCTGGATATGGTAAGAGAAAGGGTACTAGGGAGGC
GAGGCTTCCCACCAAAATCCTCTGGATGAGAAGGATGCGTGTGCTCAGGC
GGTTGCTCCGCAAATACCGTGAGTCGAAGAAAATTGACAAGCACATGTAC
CATGACATGTACATGAAGGTCAAGGGTAATGTATTTAAGAACAAGCGTGT
CCTCATGGAGAGTATCCACAAGTCAAAGGCTGAAAGGGCAAGAGAGAA
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