DN621055

Overview
NameDN621055
Unique NameDN621055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5486 contig Csv1_Contig5486:161..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621055 vs. ExPASy Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 5.131e-60
Identity = 121/168 (72.02%), Postives = 127/168 (75.60%), Query Frame = -3
Query:  260 ANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNXXXXXXXXXXXXXXXAQGPGEKAVPAPQPAEGAKKA 763
            ANSRQNIRKLVKDGFIIRKPTKIHSRSRAR+MK AK KGRHSGYGKRKGTREARLPTK+             +KYRE+KKIDKHMYHDMYM+VKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN               A+GPG    P   PA  A  A
Sbjct:   35 ANSRQNIRKLVKDGFIIRKPTKIHSRSRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGPGGDVAPVAAPAPAATPA 202          
BLAST of DN621055 vs. ExPASy Swiss-Prot
Match: RL193_ARATH (60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3)

HSP 1 Score: 229.565 bits (584), Expect = 1.493e-59
Identity = 125/174 (71.84%), Postives = 133/174 (76.44%), Query Frame = -3
Query:  254 ANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNXXXXXXXXXXXXXXXAQGPG---EKAVPAPQPAE-GAKKAKK 763
            ANSRQNIRKLVKDGFIIRKPTKIHSRSRAR++  AKRKGRHSGYGKRKGTREARLPTK+             +KYRE+KKID+HMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN               A+GPG     A P  Q AE  AKK+KK
Sbjct:   35 ANSRQNIRKLVKDGFIIRKPTKIHSRSRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREERLAKGPGGDIPAAAPPAQTAEVPAKKSKK 208          
BLAST of DN621055 vs. ExPASy Swiss-Prot
Match: RL192_ARATH (60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.950e-59
Identity = 125/174 (71.84%), Postives = 128/174 (73.56%), Query Frame = -3
Query:  254 ANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNXXXXXXXXXXXXXXXAQGP--GEKAVP--APQPAEGAKKAKK 763
            ANSRQNIRKLVKDGFIIRKPTKIHSRSRAR + EAKRKGRHSGYGKRKGTREARLPTKI              KYRESKKID+HMYHDMYMKVKGNVFKNKRVLMESIHK KAEKAREKTL+DQFEAKR KN               AQGP  GE   P  APQ  E  KK  K
Sbjct:   35 ANSRQNIRKLVKDGFIIRKPTKIHSRSRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMYHDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREERLAQGPGGGETTTPAGAPQQPEVTKKKSK 208          
BLAST of DN621055 vs. ExPASy Swiss-Prot
Match: RL19_DROME (60S ribosomal protein L19 OS=Drosophila melanogaster GN=RpL19 PE=1 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 4.364e-43
Identity = 84/130 (64.62%), Postives = 99/130 (76.15%), Query Frame = -3
Query:  371 NSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 760
            NSRQNIRKL+KDG II+KP  +HSR R R+  EA+RKGRH G+GKRKGT  AR+PTK+             +KYR+SKKID+H+YHD+YMK KGNVFKNKRVLME IHK KAEK R K L+DQ EA+R K
Sbjct:   36 NSRQNIRKLIKDGLIIKKPVVVHSRYRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLYHDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARRQK 165          
BLAST of DN621055 vs. ExPASy Swiss-Prot
Match: RL19_XENLA (60S ribosomal protein L19 OS=Xenopus laevis GN=rpl19 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.302e-42
Identity = 84/131 (64.12%), Postives = 100/131 (76.34%), Query Frame = -3
Query:  371 ANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 763
            ANSRQ IRKLVKDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:   35 ANSRQQIRKLVKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKLSWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of DN621055 vs. ExPASy Swiss-Prot
Match: RL19_RAT (60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.302e-42
Identity = 83/131 (63.36%), Postives = 100/131 (76.34%), Query Frame = -3
Query:  371 ANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 763
            ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:   35 ANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of DN621055 vs. ExPASy Swiss-Prot
Match: RL19_PONAB (60S ribosomal protein L19 OS=Pongo abelii GN=RPL19 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.302e-42
Identity = 83/131 (63.36%), Postives = 100/131 (76.34%), Query Frame = -3
Query:  371 ANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 763
            ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:   35 ANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of DN621055 vs. ExPASy Swiss-Prot
Match: RL19_MOUSE (60S ribosomal protein L19 OS=Mus musculus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.302e-42
Identity = 83/131 (63.36%), Postives = 100/131 (76.34%), Query Frame = -3
Query:  371 ANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 763
            ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:   35 ANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of DN621055 vs. ExPASy Swiss-Prot
Match: RL19_MACFA (60S ribosomal protein L19 OS=Macaca fascicularis GN=RPL19 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 6.302e-42
Identity = 83/131 (63.36%), Postives = 100/131 (76.34%), Query Frame = -3
Query:  371 ANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 763
            ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:   35 ANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of DN621055 vs. ExPASy Swiss-Prot
Match: RL19_HUMAN (60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.302e-42
Identity = 83/131 (63.36%), Postives = 100/131 (76.34%), Query Frame = -3
Query:  371 ANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAK 763
            ANSRQ IRKL+KDG IIRKP  +HSR+R R+   A+RKGRH G GKRKGT  AR+P K+             R+YRESKKID+HMYH +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EA+R+K
Sbjct:   35 ANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
The following BLAST results are available for this feature:
BLAST of DN621055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RL191_ARATH5.131e-6072.0260S ribosomal protein L19-1 OS=Arabidopsis thalian... [more]
RL193_ARATH1.493e-5971.8460S ribosomal protein L19-3 OS=Arabidopsis thalian... [more]
RL192_ARATH1.950e-5971.8460S ribosomal protein L19-2 OS=Arabidopsis thalian... [more]
RL19_DROME4.364e-4364.6260S ribosomal protein L19 OS=Drosophila melanogast... [more]
RL19_XENLA6.302e-4264.1260S ribosomal protein L19 OS=Xenopus laevis GN=rpl... [more]
RL19_RAT6.302e-4263.3660S ribosomal protein L19 OS=Rattus norvegicus GN=... [more]
RL19_PONAB6.302e-4263.3660S ribosomal protein L19 OS=Pongo abelii GN=RPL19... [more]
RL19_MOUSE6.302e-4263.3660S ribosomal protein L19 OS=Mus musculus GN=Rpl19... [more]
RL19_MACFA6.302e-4263.3660S ribosomal protein L19 OS=Macaca fascicularis G... [more]
RL19_HUMAN6.302e-4263.3660S ribosomal protein L19 OS=Homo sapiens GN=RPL19... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06C24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006C24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621055 ID=DN621055; Name=DN621055; organism=Citrus sinensis; type=EST; length=765bp
GGGGGGGGGGGGGGGCGGGGCGCCCTTTTTTTTTTACACAGAGATAATGA
ACATAATACTCATCATTCAACATAACAAGAAACTACAAACGGTTCATATG
GTTCCAAAATTCAAGGCTTTATAAGTAAATAATTTGCCATTAAACAGAAA
ACAAAATAACTTGGGAAACAAACTCCTACAAAGAAACCAGAACCAACATT
AACATATATAAGTTATCAATCTTCAGTCTCCATCATCGATGTATCAGCGA
TCACTTCTTAGCTTTCTTAGCTCCCTCAGCTGGTTGGGGTGCTGGTACTG
CCTTCTCTCCAGGTCCCTGTGCTAGTCGCTCTTCTCTCCTGGCCAGCTTT
CTCTCCCTGCTGGCCTTGTTCTTGGCGCGCTTAGCCTCAAACTGGTCAGA
AAGAGTCTTCTCTCTTGCCTTTTCAGCCTTTGACTTGTGGATACTCTCCA
TGAGGACACGCTTGTTCTTAAATACATTACCCTTGACCTTCATGTACATG
TCATGGTACATGTGCTTGTCAATTTTCTTCGACTCACGGTATTTGCGGAG
CAACCGCCTGAGCACACGCATCCTTCTCATCCAGAGGATTTTGGTGGGAA
GCCTCGCCTCCCTAGTACCCTTTCTCTTACCATATCCAGAGTGACGGCCC
TTCCTCTTGGCTTCCTTCATTCTGCGAGCGCGAGAACGGGAGTGGATCTT
TGTTGGCTTCCTGATGATGAAACCATCCTTCACCAATTTCCTAATGTTCT
GCCTGGAGTTGGCCA
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