DN621050

Overview
NameDN621050
Unique NameDN621050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length440
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10420 contig Csv1_Contig10420:42..479. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621050 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 4.034e-21
Identity = 47/72 (65.28%), Postives = 60/72 (83.33%), Query Frame = 3
Query:  225 YMTS*SKKVHKALDEALPMQHPEKIHDAMRYSLLAGGKRIRHVLCIASCELVRGDESLMMPMACALEMTHTM 440
            Y+ + ++ V+KALD A+P++ P KIH+AMRYSLLAGGKR+R VLCIA+CELV G+ES  MP ACA+EM HTM
Sbjct:   79 YIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESTAMPAACAVEMIHTM 150          
BLAST of DN621050 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.882e-21
Identity = 47/72 (65.28%), Postives = 58/72 (80.56%), Query Frame = 3
Query:  225 YMTS*SKKVHKALDEALPMQHPEKIHDAMRYSLLAGGKRIRHVLCIASCELVRGDESLMMPMACALEMTHTM 440
            Y+   +  V+KALD A+P++ P KIH+AMRYSLLAGGKR+R VLCIA+CELV G+ESL MP  CA+EM HTM
Sbjct:   75 YIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGEESLAMPARCAVEMIHTM 146          
BLAST of DN621050 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.415e-20
Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 3
Query:  219 EEYMTS*SKKVHKALDEALPMQHPEKIHDAMRYSLLAGGKRIRHVLCIASCELVRGDESLMMPMACALEMTHTM 440
            + YM S ++ V+KAL+EA+P+  P KIH+AMRY++LA GKR+R +LC+ASCELV G E+  MP ACA+EM HTM
Sbjct:   86 DPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQENAAMPAACAVEMIHTM 159          
BLAST of DN621050 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.461e-20
Identity = 42/74 (56.76%), Postives = 58/74 (78.38%), Query Frame = 3
Query:  219 EEYMTS*SKKVHKALDEALPMQHPEKIHDAMRYSLLAGGKRIRHVLCIASCELVRGDESLMMPMACALEMTHTM 440
            + YM      +++AL+ A+P+Q P KIH++MRYSLLAGGKR+R  LC+A+CELV G++S+ MP ACA+EM HTM
Sbjct:   80 KSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTM 153          
BLAST of DN621050 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.099e-18
Identity = 43/72 (59.72%), Postives = 57/72 (79.17%), Query Frame = 3
Query:  225 YMTS*SKKVHKALDEALPMQHPEKIHDAMRYSLLAGGKRIRHVLCIASCELVRGDESLMMPMACALEMTHTM 440
            YM   +  V+KAL++A+ ++ P KIH++MRYSLLAGGKR+R +LCIA+CEL  G ES+ MP ACA+EM HTM
Sbjct:   69 YMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKRVRPMLCIAACELFGGTESVAMPSACAVEMIHTM 140          
BLAST of DN621050 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.435e-18
Identity = 41/72 (56.94%), Postives = 57/72 (79.17%), Query Frame = 3
Query:  225 YMTS*SKKVHKALDEALPMQHPEKIHDAMRYSLLAGGKRIRHVLCIASCELVRGDESLMMPMACALEMTHTM 440
            YM S ++ +++ALDEA+P+  P  IH AMRY++LAGGKR+R +LC+A+CELV G+E L +  ACA+EM HTM
Sbjct:   84 YMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAIQAACAVEMIHTM 155          
BLAST of DN621050 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.301e-18
Identity = 42/72 (58.33%), Postives = 56/72 (77.78%), Query Frame = 3
Query:  225 YMTS*SKKVHKALDEALPMQHPEKIHDAMRYSLLAGGKRIRHVLCIASCELVRGDESLMMPMACALEMTHTM 440
            Y+T  +  V+KALDEA+ ++ P  IH+AMRYSLLAGGKR+R +LC+A+CELV G++   M  ACA+EM HTM
Sbjct:   81 YVTEKAISVNKALDEAIIVKEPHVIHEAMRYSLLAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTM 152          
BLAST of DN621050 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.104e-16
Identity = 39/71 (54.93%), Postives = 53/71 (74.65%), Query Frame = 3
Query:  225 YMTS*SKKVHKALDEALPMQHPEKIHDAMRYSLLAGGKRIRHVLCIASCELVRGDESLMMPMACALEMTHT 437
            YM   ++ V+ ALD ++P++ P  + +A+RYSLLAGGKR+R +LCIA CELV GDE+  M  ACA+EM HT
Sbjct:   69 YMIRKAESVNAALDVSVPLREPLTVQEAVRYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHT 139          
BLAST of DN621050 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 2.144e-14
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 3
Query:  210 SSIEEYMTS*SKKVHKALDEALPM--------QHPEKIHDAMRYSLLAGGKRIRHVLCIASCELVRGDESLMMPMACALEMTH 434
            S    YM + +K ++KALD ++P+        +   ++H AMRY+LL GGKR+R +LC+ +CELV G ES  MP ACA+EM H
Sbjct:   30 SEFISYMKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVRPMLCLVACELVGGQESTAMPAACAVEMIH 112          
BLAST of DN621050 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.657e-14
Identity = 36/72 (50.00%), Postives = 50/72 (69.44%), Query Frame = 3
Query:  225 YMTS*SKKVHKALDEALPMQHPEKIHDAMRYSLLAGGKRIRHVLCIASCELVRGDESLMMPMACALEMTHTM 440
            Y+    + V   L++++P  +P  I+D++RYSL AGGKRIR +LC+ASCEL  G   + +P ACALEM HTM
Sbjct:   13 YLYERKEIVEDTLNKSIPRGNPTFIYDSIRYSLSAGGKRIRPILCLASCELAGGTMEMALPTACALEMIHTM 84          
The following BLAST results are available for this feature:
BLAST of DN621050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
GGPP1_ARATH4.034e-2165.28Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_SINAL6.882e-2165.28Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP2_ARATH3.415e-2059.46Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
GGPPS_HEVBR4.461e-2056.76Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CATRO1.099e-1859.72Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP4_ARATH1.435e-1856.94Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]
GGPPS_CAPAN9.301e-1858.33Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP3_ARATH5.104e-1654.93Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
GGPP6_ARATH2.144e-1445.78Geranylgeranyl pyrophosphate synthetase 6, mitocho... [more]
CRTE_CYAPA3.657e-1450.00Geranylgeranyl pyrophosphate synthetase homolog OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06C21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006C21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621050 ID=DN621050; Name=DN621050; organism=Citrus sinensis; type=EST; length=440bp
ACCATTCCTAGCTGTACCCATTCAGCTCTCCTCAAGAACTCCCTCACTCA
ATTATTTCAAAATGCCCTTTATGATCCCATTTCCGAACATGAAACCCTTT
CCCATGAAAAATAACGCCTGCCACGCTGAAAACTTACCTTCGGTAAAACC
ATCCCAGGGTGCATAATCGATCATGACCCTCACGCCGGTAAAGATAGCTC
TACCAACTTTCCAGTATTGAAGAATACATGACCAGCTAGTCGAAAAAAGT
GCACAAAGCATTAGATGAGGCATTGCCCATGCAACATCCAGAAAAAATAC
ACGACGCCATGAGATACTCTCTTCTTGCTGGAGGCAAGCGTATCCGTCAT
GTTCTATGCATTGCTTCATGCGAATTAGTACGAGGAGATGAATCCTTGAT
GATGCCAATGGCTTGTGCACTAGAGATGACTCACACGATG
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