DN621047

Overview
NameDN621047
Unique NameDN621047
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6016 contig Csv1_Contig6016:408..1173. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN621047 vs. ExPASy Swiss-Prot
Match: TAF11_DICDI (Transcription initiation factor TFIID subunit 11 OS=Dictyostelium discoideum GN=taf11 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.099e-14
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 3 
Query:  525 IVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKLEGKVP--KRSVP 689
            IV+ GIAK+FVGE+VE AR +M E  E+GPIRP HIREAYRRLK    +P  K+SVP
Sbjct:  390 IVMGGIAKVFVGEIVELARSIMEEWRETGPIRPRHIREAYRRLKESNSIPYYKKSVP 446

HSP 2 Score: 27.335 bits (59), Expect = 3.099e-14
Identity = 9/24 (37.50%), Postives = 17/24 (70.83%), Query Frame = 2 
Query:  380 KMQAILNQFTEDQMNRYESFRRSA 451
            +M  ++  F+EDQ  R+E ++RS+
Sbjct:  343 QMNTLIKHFSEDQQTRFEYYKRSS 366
[Close]
BLAST of DN621047 vs. ExPASy Swiss-Prot
Match: TAF11_MOUSE (Transcription initiation factor TFIID subunit 11 OS=Mus musculus GN=Taf11 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 2.578e-13
Identity = 31/66 (46.97%), Postives = 46/66 (69.70%), Query Frame = 3 
Query:  477 LLVSITGRQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKLEGKVP 674
            L+ SITG   +S  + I + GI+K+FVGE+VE A  V  +  E+ P++P H+REA RRLK +G++P
Sbjct:  137 LIQSITGTS-VSQNVVIAMSGISKVFVGEVVEEALDVCEKWGETPPLQPKHMREAVRRLKSKGQIP 201

HSP 2 Score: 37.7354 bits (86), Expect = 2.578e-13
Identity = 15/30 (50.00%), Postives = 24/30 (80.00%), Query Frame = 2 
Query:  362 DPAKMAKMQAILNQFTEDQMNRYESFRRSA 451
            D  ++ KMQ +++ F+E+Q+NRYE +RRSA
Sbjct:   99 DEDEIQKMQILVSSFSEEQLNRYEMYRRSA 128
[Close]
BLAST of DN621047 vs. ExPASy Swiss-Prot
Match: TAF11_RAT (Transcription initiation factor TFIID subunit 11 OS=Rattus norvegicus GN=Taf11 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 4.349e-13
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 3 
Query:  477 LLVSITGRQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKLEGKVP 674
            L+ SITG   +S  + I + GI+K+FVGE+VE A  V  +  E  P++P H+REA RRLK +G++P
Sbjct:  137 LIQSITGTS-VSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIP 201

HSP 2 Score: 37.7354 bits (86), Expect = 4.349e-13
Identity = 15/30 (50.00%), Postives = 24/30 (80.00%), Query Frame = 2 
Query:  362 DPAKMAKMQAILNQFTEDQMNRYESFRRSA 451
            D  ++ KMQ +++ F+E+Q+NRYE +RRSA
Sbjct:   99 DEDEIQKMQILVSSFSEEQLNRYEMYRRSA 128
[Close]
BLAST of DN621047 vs. ExPASy Swiss-Prot
Match: TAF11_PONAB (Transcription initiation factor TFIID subunit 11 OS=Pongo abelii GN=TAF11 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 4.349e-13
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 3 
Query:  477 LLVSITGRQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKLEGKVP 674
            L+ SITG   +S  + I + GI+K+FVGE+VE A  V  +  E  P++P H+REA RRLK +G++P
Sbjct:  137 LIQSITGTS-VSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIP 201

HSP 2 Score: 37.7354 bits (86), Expect = 4.349e-13
Identity = 15/30 (50.00%), Postives = 24/30 (80.00%), Query Frame = 2 
Query:  362 DPAKMAKMQAILNQFTEDQMNRYESFRRSA 451
            D  ++ KMQ +++ F+E+Q+NRYE +RRSA
Sbjct:   99 DEDEIQKMQILVSSFSEEQLNRYEMYRRSA 128
[Close]
BLAST of DN621047 vs. ExPASy Swiss-Prot
Match: TAF11_HUMAN (Transcription initiation factor TFIID subunit 11 OS=Homo sapiens GN=TAF11 PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 4.349e-13
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 3 
Query:  477 LLVSITGRQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKLEGKVP 674
            L+ SITG   +S  + I + GI+K+FVGE+VE A  V  +  E  P++P H+REA RRLK +G++P
Sbjct:  137 LIQSITGTS-VSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIP 201

HSP 2 Score: 37.7354 bits (86), Expect = 4.349e-13
Identity = 15/30 (50.00%), Postives = 24/30 (80.00%), Query Frame = 2 
Query:  362 DPAKMAKMQAILNQFTEDQMNRYESFRRSA 451
            D  ++ KMQ +++ F+E+Q+NRYE +RRSA
Sbjct:   99 DEDEIQKMQILVSSFSEEQLNRYEMYRRSA 128
[Close]
BLAST of DN621047 vs. ExPASy Swiss-Prot
Match: TAF11_DROME (Transcription initiation factor TFIID subunit 11 OS=Drosophila melanogaster GN=Taf11 PE=1 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.005e-11
Identity = 31/66 (46.97%), Postives = 45/66 (68.18%), Query Frame = 3 
Query:  477 LLVSITGRQKISLPMTIVVCGIAKMFVGELVETARMVMTERNESGPIRPCHIREAYRRLKLEGKVP 674
            L+ +ITG   +S  + I + GIAK+FVGE+VE A  VM  + ESG ++P  IREA RRL+ + ++P
Sbjct:  120 LMQTITGCS-VSQNVVIAMSGIAKVFVGEVVEEALDVMEAQGESGALQPKFIREAVRRLRTKDRMP 184

HSP 2 Score: 35.039 bits (79), Expect = 1.005e-11
Identity = 13/24 (54.17%), Postives = 21/24 (87.50%), Query Frame = 2 
Query:  380 KMQAILNQFTEDQMNRYESFRRSA 451
            +MQ +++ FTE+Q++RYE +RRSA
Sbjct:   88 RMQVLVSNFTEEQLDRYEMYRRSA 111
The following BLAST results are available for this feature:
BLAST of DN621047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TAF11_DICDI3.099e-1464.91Transcription initiation factor TFIID subunit 11 O... [more]
TAF11_MOUSE2.578e-1346.97Transcription initiation factor TFIID subunit 11 O... [more]
TAF11_RAT4.349e-1346.97Transcription initiation factor TFIID subunit 11 O... [more]
TAF11_PONAB4.349e-1346.97Transcription initiation factor TFIID subunit 11 O... [more]
TAF11_HUMAN4.349e-1346.97Transcription initiation factor TFIID subunit 11 O... [more]
TAF11_DROME1.005e-1146.97Transcription initiation factor TFIID subunit 11 O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06C20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621047 ID=DN621047; Name=DN621047; organism=Citrus sinensis; type=EST; length=766bp
CTTTTGGCTTTTTAGAACCCTAGGGTCTAGGTCAATTAAGAAATTGCATC
GTATGGTATTGGTTCAGAGGATGAAGCAGTCAAAGGACCCATTTGAGGCA
GCATTGGAGGAATCGCCCGGGGATTCCCCGGATGAGTTAGAGATTGAGAC
TCAACCTCAGACTGGTACCGCTGCTGGTTCTGCCACTGCCGCCGTTACCG
GCGAGTTAGAAGATGAGTTTGATAATCTAGAGAGTCAAGCTCCAATGTCC
GTGTCTGCTGGCCCTGCTGCTATCATGACCATGTCCAAGAATAAAGATGA
GTATGACGAAGAAGACGACGAAAACGTGGATGTGGAACTTGGCAAGTTCC
CTTCTAGTTCTGACCCTGCTAAGATGGCCAAGATGCAAGCTATTCTTAAT
CAGTTCACTGAGGACCAGATGAATCGGTACGAGTCCTTTCGGAGATCTGC
ACTTCTTATTTTTTTCATGCCCCCCGTTGTTGGTGAGCATCACCGGGAGA
CAAAAAATTTCTTTACCAATGACAATTGTGGTCTGTGGGATTGCTAAAAT
GTTTGTGGGTGAACTTGTTGAAACAGCTCGAATGGTTATGACGGAGAGGA
ATGAATCTGGGCCAATCAGGCCTTGCCACATCAGAGAAGCTTATAGACGA
CTAAAGCTTGAGGGCAAAGTACCAAAGAGATCAGTTCCAAGGTTGTTCCG
ATAACTGCAAATATTCTGATTTCTTATTATTTAGCTAGAGAGTTCATTTC
TCAGCAGCTGATTGGG
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