DN621045

Overview
NameDN621045
Unique NameDN621045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig990 contig Csv1_Contig990:559..1388. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621045 vs. ExPASy Swiss-Prot
Match: KDSB_PARUW (3-deoxy-manno-octulosonate cytidylyltransferase OS=Protochlamydia amoebophila (strain UWE25) GN=kdsB PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.492e-26
Identity = 68/142 (47.89%), Postives = 88/142 (61.97%), Query Frame = -1
Query:  405 PEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERN 827
            P  I+  V+AL   P    ST VT L   E+A + + VKCV+D  G A+YFSR LIP NK+        Y  HLG+  Y  +F+  Y  L  TPLQLEEDLEQLKVLE+GY++KV  VD    GVD PED+ K+E ++ ++N
Sbjct:  115 PLTINLAVQALVNDPQGQVSTIVTPLLDEEEAKNSSIVKCVMDQQGNALYFSRALIPSNKTNSFKNGAIYFRHLGLYVYRPSFIINYQKLPSTPLQLEEDLEQLKVLEHGYRIKVAIVDQANIGVDTPEDIHKVEEWLCKQN 256          
BLAST of DN621045 vs. ExPASy Swiss-Prot
Match: KDSB_SOLUE (3-deoxy-manno-octulosonate cytidylyltransferase OS=Solibacter usitatus (strain Ellin6076) GN=kdsB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.351e-22
Identity = 55/140 (39.29%), Postives = 82/140 (58.57%), Query Frame = -1
Query:  414 EPEIIDGVVKALQAAPDAVFSTAVTSLK-PEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMR 830
            +P  ID  V  L   PD +  T    ++ P +  DPN VK V D+ G AIYFSR  IP+++    +   PY  H+G+  Y  +FL  Y  L   PL+  E LEQL+ LENGY+++V++ ++E+ GVD PED+E++    +
Sbjct:  105 DPAAIDAAVLPLVHEPDVLMGTLKKRIEDPREIVDPNVVKVVTDHAGDAIYFSRCPIPFDRDRSADT--PYFKHVGLYVYQRDFLLSYSTLPVGPLERSERLEQLRALENGYRIRVVETEYESLGVDTPEDLERVSRLFK 242          
BLAST of DN621045 vs. ExPASy Swiss-Prot
Match: KDSB_FUSNN (3-deoxy-manno-octulosonate cytidylyltransferase OS=Fusobacterium nucleatum subsp. nucleatum GN=kdsB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.351e-22
Identity = 56/144 (38.89%), Postives = 86/144 (59.72%), Query Frame = -1
Query:  402 EPEIIDGVVKALQAAPDAVFSTAVTSL-KPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIESFMRERNL 830
            E E+I+ +++  +   D   +T    L   E+  +PN VK V D + YAIYFSR +IPY +    N    Y  H+GI  Y  +F+  Y  +  TPL+  E LEQL+VLENGYK+KV++  H   GVD  E++E++ ++++E N+
Sbjct:  103 EYEMINSLIETFKENKDLKMATLKHKLLNKEEIKNPNNVKVVCDKNDYAIYFSRSVIPYPRK---NGNISYFKHIGIYGYKRDFVIEYSKMLATPLEEIESLEQLRVLENGYKIKVLETTHSLIGVDTQENLEQVINYIKENNI 243          
BLAST of DN621045 vs. ExPASy Swiss-Prot
Match: KDSB_VARPS (3-deoxy-manno-octulosonate cytidylyltransferase OS=Variovorax paradoxus (strain S110) GN=kdsB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.764e-20
Identity = 57/146 (39.04%), Postives = 84/146 (57.53%), Query Frame = -1
Query:  423 EPEIIDGVVKALQAAPDAVFSTAVTSLKPEDAF-DPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLL-------HLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEA--HGVDAPEDVEKIES 830
            +P +ID V  AL A P+A  STA   +   D F +PN VK V+D  G A+YFSR  IP+ + G  N   P +L       H+GI  Y + F++ +P L P P++  E LEQL+ L +G+++  + V H A   GVD P D+E++ +
Sbjct:  105 DPALIDAVASALAAHPEAAMSTAAHEIDSLDDFLNPNVVKAVLDAQGNALYFSRAPIPWWRDGSANGAPPSVLPAPAPLRHIGIYGYRAGFVRSFPSLAPAPVEATEALEQLRALWHGHRI-AVHVSHVAPGPGVDTPADLERVRA 249          
BLAST of DN621045 vs. ExPASy Swiss-Prot
Match: KDSB_DICNV (3-deoxy-manno-octulosonate cytidylyltransferase OS=Dichelobacter nodosus (strain VCS1703A) GN=kdsB PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.764e-20
Identity = 55/136 (40.44%), Postives = 80/136 (58.82%), Query Frame = -1
Query:  423 PEIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAPEDVEKIES 827
            P++I  V + L     A  +T  T     ++  PN VK V D  GYA+YFSR ++PY +     P   YL H+GI +Y    LK YP L PTPL+  E LEQL+ LE+G+K+ V ++D     GVD+PED+ ++++
Sbjct:  107 PDLITTVARTLIEHTQASVATLATVCDAPES--PNTVKVVCDCAGYALYFSRSVMPYVRDAAA-PPVSYLRHIGIYAYRVQLLKRYPQLAPTPLEQAEKLEQLRFLEHGFKIAVAQIDEAPPAGVDSPEDLARVQA 239          
BLAST of DN621045 vs. ExPASy Swiss-Prot
Match: KDSB_THEYD (3-deoxy-manno-octulosonate cytidylyltransferase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=kdsB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.853e-19
Identity = 54/137 (39.42%), Postives = 82/137 (59.85%), Query Frame = -1
Query:  426 EIIDGVVKALQAAPDAVFSTAVTSLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKS----GKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKIE 824
            E+ID ++  ++   D++ + A    K +D F+PN VK V D +GYA+YFSR  IP+++     G     F Y  H+GI  Y+   LK + GL  + L+  E LEQL+ LENG K+KV   ++++ G+D PED+E  E
Sbjct:  113 EMIDQLIDLMKNENDSIGTLAKRIEKEDDFFNPNIVKVVFDKNGYALYFSRSPIPFDREKFIKGFSKNNFMYK-HIGIYGYNVRILKNFVGLPMSRLEEIESLEQLRALENGIKIKVGLTEYDSFGIDTPEDLEVAE 248          
BLAST of DN621045 vs. ExPASy Swiss-Prot
Match: KDSB_GEOUR (3-deoxy-manno-octulosonate cytidylyltransferase OS=Geobacter uraniireducens (strain Rf4) GN=kdsB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.853e-19
Identity = 57/144 (39.58%), Postives = 80/144 (55.56%), Query Frame = -1
Query:  429 EPEIIDGVVKALQAAPDAVFSTAVTSLKP-EDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNP---------QFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDHEAHGVDAPEDVEKI 830
            EP +ID  +K L      +  T  T +K   D   PN VK V D  GYA+YFSR  +P N   K N          +     H+G+  Y  +FL  +  + PT L++ E LEQL+VLENGY++KV++ D+E+ GVD P D+EK+
Sbjct:  103 EPAMIDEAIKPLAEDSSVMMGTLKTRIKTLHDFLSPNVVKVVTDWEGYALYFSRSPLP-NFRDKWNDLKDEAFASRKLLCYKHVGLYVYRRDFLLQFAQMSPTYLEMAEKLEQLRVLENGYRIKVVETDYESIGVDTPGDLEKV 245          
BLAST of DN621045 vs. ExPASy Swiss-Prot
Match: KDSB_CHLTB (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=kdsB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.853e-19
Identity = 56/139 (40.29%), Postives = 78/139 (56.12%), Query Frame = -1
Query:  417 PEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAPEDVEKIESFM 827
            P +IDG+V  L+  P A   T VT +  PE     ++VKCV D +G A+YFSR  IP+N         P  LH+G+ ++   FL  Y  + P+ L L EDLEQL+VLE G  + V  V +     VD PED+ K+E ++
Sbjct:  112 PTVIDGLVSTLENNPAADMVTPVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNFKHPT----PIYLHIGVYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLETGRSIYVHVVQNATGPSVDYPEDITKVEQYL 246          
BLAST of DN621045 vs. ExPASy Swiss-Prot
Match: KDSB_CHLT2 (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=kdsB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.853e-19
Identity = 56/139 (40.29%), Postives = 78/139 (56.12%), Query Frame = -1
Query:  417 PEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAPEDVEKIESFM 827
            P +IDG+V  L+  P A   T VT +  PE     ++VKCV D +G A+YFSR  IP+N         P  LH+G+ ++   FL  Y  + P+ L L EDLEQL+VLE G  + V  V +     VD PED+ K+E ++
Sbjct:  112 PTVIDGLVSTLENNPAADMVTPVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNFKHPT----PIYLHIGVYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLETGRSIYVHVVQNATGPSVDYPEDITKVEQYL 246          
BLAST of DN621045 vs. ExPASy Swiss-Prot
Match: KDSB_CHLTR (3-deoxy-manno-octulosonate cytidylyltransferase OS=Chlamydia trachomatis GN=kdsB PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.033e-19
Identity = 56/139 (40.29%), Postives = 79/139 (56.83%), Query Frame = -1
Query:  417 PEIIDGVVKALQAAPDAVFSTAVT-SLKPEDAFDPNRVKCVVDNHGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDSNFLKIYPGLHPTPLQLEEDLEQLKVLENGYKMKVIKVDH-EAHGVDAPEDVEKIESFM 827
            P +IDG+V  L+  P A   T+VT +  PE     ++VKCV D +G A+YFSR  IP+N         P  LH+G+ ++   FL  Y  + P+ L L EDLEQL+VLE G  + V  V +     VD PED+ K+E ++
Sbjct:  112 PTVIDGLVSTLENNPAADMVTSVTETTDPEAILTDHKVKCVFDKNGKALYFSRSAIPHNFKHPT----PIYLHIGVYAFRKAFLSEYVKIPPSSLSLAEDLEQLRVLEIGRSIYVHVVQNATGPSVDYPEDITKVEQYL 246          
The following BLAST results are available for this feature:
BLAST of DN621045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 308
Match NameE-valueIdentityDescription
KDSB_PARUW2.492e-2647.893-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_SOLUE6.351e-2239.293-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_FUSNN6.351e-2238.893-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_VARPS7.764e-2039.043-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_DICNV7.764e-2040.443-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_THEYD3.853e-1939.423-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_GEOUR3.853e-1939.583-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLTB3.853e-1940.293-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLT23.853e-1940.293-deoxy-manno-octulosonate cytidylyltransferase OS... [more]
KDSB_CHLTR5.033e-1940.293-deoxy-manno-octulosonate cytidylyltransferase OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06C19_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006C19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621045 ID=DN621045; Name=DN621045; organism=Citrus sinensis; type=EST; length=830bp
TTTTTTAAAGAACTTAAATATTATCGCTTTTTATTCCATTCATTACAGCA
AGAAGTACTTTAAAATATGTAATATGGTACATATTCACAAACTCAACAAC
AGACGAGGACCCCAAAAAAACAAAAAAAAGTATTATTACAATGAATCAAC
GTCTAACTCAAAATTGCTGTTACTCACAGCTACTGGTACAAGTACACCCA
CAAAAACTCCGGTAACTCCAACAATGGGAAAAACCGTGGCAGGCAAATAT
AAATAGAATTATTTTCCCGGGGAAGAGACTGTCACAGAGAGAAAGAACAC
ACCACCAATCAAACTATAATTAACATGGAGCAAGCTGACTGCTGGTACAG
GCAAATTCGCATCCTTTCCTTTTAATCAGATTATGTCACTAAAAACTAGG
ACAAGTTTCTCTCACGCATAAATGATTCTATCTTCTCAACGTCTTCTGGA
GCATCAACACCGTGAGCTTCATGGTCTACCTTTATAACCTTCATCTTATA
GCCATTCTCAAGGACTTTCAGCTGTTCTAGATCCTCTTCTAGTTGTAGGG
GAGTAGGATGAAGGCCTGGATATATCTTCAGGAAGTTTGAGTCATAGCTC
TGAATTCCAAGATGAAGCAAATATGGAAATTGTGGATTGACTTTTCCTGA
CTTGTTATATGGAATTAATCCCCTTGAAAAATATATGGCATAACCATGAT
TATCCACAACACATTTCACCCGATTTGGATCAAATGCATCTTCAGGTTTT
AAAGATGTCACAGCAGTACTGAACACTGCATCTGGGGCTGCCTGCAGAGC
TTTCACAACACCATCTATAATCTCTGGTTC
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