DN621041

Overview
NameDN621041
Unique NameDN621041
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621041 vs. ExPASy Swiss-Prot
Match: AFB3_ARATH (Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis thaliana GN=AFB3 PE=1 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.363e-56
Identity = 111/152 (73.03%), Postives = 126/152 (82.89%), Query Frame = -3
Query:  262 AIVQSCKXXXXXXXXXXLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDD---QMEFSLDDRQKVGKMYLYRTLVGPRKDAPDFV 708
            AIVQ+CK          LTDQVFLYIGMYAEQLEMLSIAFAG++DKGMLYVLNGCKK+RKLEIRDSPFGN ALL DVG+YETMRSLWMSSCEVTLGGC+ LA+  PRLNVEIINE++     +   D+R+KV K+YLYRT+VG RKDAP +V
Sbjct:  423 AIVQACKGLRRLSVSGLLTDQVFLYIGMYAEQLEMLSIAFAGDTDKGMLYVLNGCKKMRKLEIRDSPFGNAALLADVGRYETMRSLWMSSCEVTLGGCKRLAQNSPRLNVEIINENENNGMEQNEEDEREKVDKLYLYRTVVGTRKDAPPYV 574          
BLAST of DN621041 vs. ExPASy Swiss-Prot
Match: AFB2_ARATH (Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis thaliana GN=AFB2 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.968e-55
Identity = 111/155 (71.61%), Postives = 124/155 (80.00%), Query Frame = -3
Query:  253 AIVQSCKXXXXXXXXXXLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDD---QMEFSLDDRQKVGKMYLYRTLVGPRKDAPDFVWTL 708
            AIV++CK          LTDQVFLYIGMYA QLEMLSIAFAG++DKGMLYVLNGCKK++KLEIRDSPFG+TALL DV KYETMRSLWMSSCEVTL GC+ LA+K P LNVEIINE+D     E   + RQKV K+YLYRT+VG R DAP FVW L
Sbjct:  421 AIVKACKSLRRLSLSGLLTDQVFLYIGMYANQLEMLSIAFAGDTDKGMLYVLNGCKKMKKLEIRDSPFGDTALLADVSKYETMRSLWMSSCEVTLSGCKRLAEKAPWLNVEIINENDNNRMEENGHEGRQKVDKLYLYRTVVGTRMDAPPFVWIL 575          
BLAST of DN621041 vs. ExPASy Swiss-Prot
Match: TIR1B_ORYSJ (Transport inhibitor response 1-like protein Os04g0395600 OS=Oryza sativa subsp. japonica GN=Os04g0395600 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.046e-48
Identity = 99/152 (65.13%), Postives = 116/152 (76.32%), Query Frame = -3
Query:  262 AIVQSCKXXXXXXXXXXLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDD---QMEFSLDDRQKVGKMYLYRTLVGPRKDAPDFV 708
            AIV+ CK          LTD+VF+YIG YA+QLEMLSIAFAG+SDKGM++V+NGCK LRKLEIRDSPFG+ ALL +  +YETMRSLWMSSC VTL GCQ LA KMP LNVE+INE D   +ME +  D  KV K+Y+YRT  G R DAP+FV
Sbjct:  421 AIVRECKGLQRLSISGLLTDKVFMYIGKYAKQLEMLSIAFAGDSDKGMMHVMNGCKNLRKLEIRDSPFGDAALLGNFARYETMRSLWMSSCNVTLKGCQVLASKMPMLNVEVINERDGSNEMEENHGDLPKVEKLYVYRTTAGARDDAPNFV 572          
BLAST of DN621041 vs. ExPASy Swiss-Prot
Match: TIRC_ORYSJ (Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica GN=Os11g0515500 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.670e-46
Identity = 92/153 (60.13%), Postives = 116/153 (75.82%), Query Frame = -3
Query:  256 AIVQSCKXXXXXXXXXXLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQME--FSLDDRQKVGKMYLYRTLVGPRKDAPDFVWT 708
            AIVQSCK          LTD VFLYIGMYAE+LEMLS+AFAG++D GM YVLNGCK L+KLEIRDSPFG++ALL  + +YE MRSLW+SSC VTLGGC++LA  M  LN+E++N    +    + +D +KV K+Y+YRT+ GPR DAP+F+ T
Sbjct:  415 AIVQSCKGLRRLCLSGLLTDTVFLYIGMYAERLEMLSVAFAGDTDDGMTYVLNGCKNLKKLEIRDSPFGDSALLAGMHQYEAMRSLWLSSCNVTLGGCKSLAASMANLNIEVMNRAASINEADNANDAKKVKKLYIYRTVAGPRGDAPEFIST 567          
BLAST of DN621041 vs. ExPASy Swiss-Prot
Match: TIR1_ARATH (Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana GN=TIR1 PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.336e-40
Identity = 83/152 (54.61%), Postives = 108/152 (71.05%), Query Frame = -3
Query:  253 AIVQSCKXXXXXXXXXXLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQMEFSLDDRQKVGKMYLYRTLVGPRKDAPDFVWTL 708
            AIV+ CK          LTD+VF YIG YA+++EMLS+AFAG+SD GM +VL+GC  LRKLEIRD PFG+ ALL +  K ETMRSLWMSSC V+ G C+ L +KMP+LNVE+I+E    + S  +   V ++++YRT+ GPR D P FVW +
Sbjct:  426 AIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPD-SRPESCPVERVFIYRTVAGPRFDMPGFVWNM 576          
BLAST of DN621041 vs. ExPASy Swiss-Prot
Match: TIR1A_ORYSJ (Transport inhibitor response 1-like protein Os05g0150500 OS=Oryza sativa subsp. japonica GN=Os05g0150500 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.674e-38
Identity = 83/144 (57.64%), Postives = 104/144 (72.22%), Query Frame = -3
Query:  283 AIVQSCKXXXXXXXXXXLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQM--EFSLDDRQKVGKMYLYRTLVGPR 708
            AIV+SC+          LTD VF  IG +A++LEMLSIAFAGNSD G+ Y+L+GCK L+KLEIRD PFG+  LL +  K ETMRSLWMSSC +TLG C+ LA+KMPRL+VEI+N+  +     SL D   V K+Y+YRT+ GPR
Sbjct:  437 AIVESCRGLRRLSISGLLTDLVFKSIGAHADRLEMLSIAFAGNSDLGLHYILSGCKSLKKLEIRDCPFGDKPLLANAAKLETMRSLWMSSCLLTLGACRQLARKMPRLSVEIMNDPGRSCPLDSLPDETPVEKLYVYRTIAGPR 580          
BLAST of DN621041 vs. ExPASy Swiss-Prot
Match: GRH1_ARATH (GRR1-like protein 1 OS=Arabidopsis thaliana GN=GRH1 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.855e-38
Identity = 78/152 (51.32%), Postives = 107/152 (70.39%), Query Frame = -3
Query:  253 AIVQSCKXXXXXXXXXXLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQMEFSLDDRQKVGKMYLYRTLVGPRKDAPDFVWTL 708
            AI + C+          L+D+ F YIG +A+++ MLSIAFAG+SD  + ++L+GC+ L+KLEIRD PFG+TALL    K ETMRSLWMSSC V+ G C+ L++KMPRLNVE+I  D+    S  +   V ++Y+YRT+ GPR D P+FVWT+
Sbjct:  422 AIAEGCRDLRRLSVSGLLSDKAFKYIGKHAKKVRMLSIAFAGDSDLMLHHLLSGCESLKKLEIRDCPFGDTALLEHAAKLETMRSLWMSSCFVSFGACKLLSQKMPRLNVEVI--DEHPPESRPESSPVERIYIYRTVAGPRMDTPEFVWTI 571          
BLAST of DN621041 vs. ExPASy Swiss-Prot
Match: FBX14_ARATH (F-box protein FBX14 OS=Arabidopsis thaliana GN=FBX14 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.612e-33
Identity = 71/152 (46.71%), Postives = 96/152 (63.16%), Query Frame = -3
Query:  253 AIVQSCKXXXXXXXXXXLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQMEFSLDDRQKVGKMYLYRTLVGPRKDAPDFVWTL 708
            AIV++CK          LTD+ F YIG Y + +  LS+AFAGNSDK + YVL GC KL+KLEIRDSPFG+  L + + +Y  MR +W+SSC ++ GGC+ ++  +P + VE+   D   +        V  +YLYR+L GPRKDAP FV  L
Sbjct:  472 AIVKNCKKLTRLAVSGLLTDEAFSYIGEYGKLIRTLSVAFAGNSDKALRYVLEGCPKLQKLEIRDSPFGDVGLRSGMHRYSNMRFVWLSSCLISRGGCRGVSHALPNVVVEVFGADGDDDEDTVTGDYVETLYLYRSLDGPRKDAPKFVTIL 623          
BLAST of DN621041 vs. ExPASy Swiss-Prot
Match: TIR1L_ARATH (Transport inhibitor response 1-like protein OS=Arabidopsis thaliana GN=At5g49980 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.161e-33
Identity = 72/152 (47.37%), Postives = 99/152 (65.13%), Query Frame = -3
Query:  253 AIVQSCKXXXXXXXXXXLTDQVFLYIGMYAEQLEMLSIAFAGNSDKGMLYVLNGCKKLRKLEIRDSPFGNTALLTDVGKYETMRSLWMSSCEVTLGGCQTLAKKMPRLNVEIINEDDQMEFSLDDRQKVGKMYLYRTLVGPRKDAPDFVWTL 708
            AIV++CK          LTDQ F Y+G Y + +  LS+AFAG+SD  + +VL GC +L+KLEIRDSPFG+ AL + + +Y  MR +WMS+C ++ G C+ +A+ MP L VE+I  DD      D+R  V  +Y+YR+L GPR DAP FV  L
Sbjct:  472 AIVKNCKKLTRLAVSGLLTDQAFRYMGEYGKLVRTLSVAFAGDSDMALRHVLEGCPRLQKLEIRDSPFGDVALRSGMHRYYNMRFVWMSACSLSKGCCKDIARAMPNLVVEVIGSDDDD----DNRDYVETLYMYRSLDGPRNDAPKFVTIL 619          
The following BLAST results are available for this feature:
BLAST of DN621041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
AFB3_ARATH1.363e-5673.03Protein AUXIN SIGNALING F-BOX 3 OS=Arabidopsis tha... [more]
AFB2_ARATH1.968e-5571.61Protein AUXIN SIGNALING F-BOX 2 OS=Arabidopsis tha... [more]
TIR1B_ORYSJ1.046e-4865.13Transport inhibitor response 1-like protein Os04g0... [more]
TIRC_ORYSJ1.670e-4660.13Transport inhibitor response 1-like protein Os11g0... [more]
TIR1_ARATH2.336e-4054.61Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidop... [more]
TIR1A_ORYSJ1.674e-3857.64Transport inhibitor response 1-like protein Os05g0... [more]
GRH1_ARATH2.855e-3851.32GRR1-like protein 1 OS=Arabidopsis thaliana GN=GRH... [more]
FBX14_ARATH3.612e-3346.71F-box protein FBX14 OS=Arabidopsis thaliana GN=FBX... [more]
TIR1L_ARATH6.161e-3347.37Transport inhibitor response 1-like protein OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06C16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006C16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621041 ID=DN621041; Name=DN621041; organism=Citrus sinensis; type=EST; length=710bp
CATTACCAATCTATTATAATCACAAACGAGTACAAATAGCAAAAATAGCA
AATCCCTCCGTAAATTAAAAAAGCAATAGCATAAAACTAAATAACCGACA
GCCTAAAAGTCCATAAAATCAACTGGCCTACGCAAAGTACATCTACTCAT
AACAAGAAAACAACCACCCGAGCCAAGCAGACGATGATGCAGAGCCAAGC
AGACGATGATGCAGAGCCAAGCAGACGATGATGCACACCCCGGATAAACT
TAGAGAGTCCACACAAAATCTGGCGCATCTTTCCTTGGCCCGACCAGGGT
GCGGTACAAATACATCTTCCCTACTTTTTGTCTATCATCCAGGCTAAACT
CCATCTGATCATCTTCATTTATGATCTCCACATTGAGCCTAGGCATCTTC
TTCGCAAGTGTCTGGCAGCCTCCCAGGGTAACTTCGCAGGACGACATCCA
AAGGGATCGCATTGTCTCATACTTTCCCACGTCCGTCAGAAGTGCTGTGT
TACCGAAGGGGCTGTCCCTGATTTCCAGCTTGCGGAGCTTCTTGCACCCG
TTCAATACATACAGCATTCCCTTGTCGCTATTCCCAGCAAATGCAATAGA
AAGCATTTCCAGCTGCTCAGCATACATTCCAATGTAAAGGAAAACCTGGT
CAGTTAAAAGGCCAGAGAGTGACAATCGCCTTAGACGCTTGCATGATTGT
ACAATTGCCC
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