DN621037

Overview
NameDN621037
Unique NameDN621037
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1588 contig Csv1_Contig1588:933..1533. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621037 vs. ExPASy Swiss-Prot
Match: CSN5B_ARATH (COP9 signalosome complex subunit 5b OS=Arabidopsis thaliana GN=CSN5B PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.279e-32
Identity = 76/103 (73.79%), Postives = 84/103 (81.55%), Query Frame = -3
Query:  291 SFSPLLGNGEYVAGQILDLAEKLEQAENQLFHSRYGPLI-APPPRRKEEDSQLAKITRDSGKITVEQVHGLMSQVIKDILFNFVRQSPKTHAEPFDPEPMIES 596
            S SPLLGNG+YVAGQI DLAEKLEQAE+QL +SRYG +  A   RRKE++ QLAKITRDS KITVEQVHGLMSQVIKDILFN  RQS K+  +  DPEPMI S
Sbjct:  255 SSSPLLGNGDYVAGQISDLAEKLEQAESQLANSRYGGIAPAGHQRRKEDEPQLAKITRDSAKITVEQVHGLMSQVIKDILFNSARQSKKSADDSSDPEPMITS 357          
BLAST of DN621037 vs. ExPASy Swiss-Prot
Match: CSN5A_ARATH (COP9 signalosome complex subunit 5a OS=Arabidopsis thaliana GN=CSN5A PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.259e-28
Identity = 69/102 (67.65%), Postives = 80/102 (78.43%), Query Frame = -3
Query:  297 SFSPLLGNGEYVAGQILDLAEKLEQAENQLFHSRYGPLIAPPPRRKEED-SQLAKITRDSGKITVEQVHGLMSQVIKDILFNFVRQS-PKTHAEPFDPEPMI 596
            S SPLLGNG+YVAGQI DLAEKLEQAE+ L  SR+G ++     +K+ED SQL KITRDS KITVEQVHGLMSQVIKD LFN +RQS  K+  +  DP+PMI
Sbjct:  255 SSSPLLGNGDYVAGQISDLAEKLEQAESHLVQSRFGGVVPSSLHKKKEDESQLTKITRDSAKITVEQVHGLMSQVIKDELFNSMRQSNNKSPTDSSDPDPMI 356          
BLAST of DN621037 vs. ExPASy Swiss-Prot
Match: CSN5_DICDI (COP9 signalosome complex subunit 5 OS=Dictyostelium discoideum GN=csn5 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.862e-16
Identity = 43/81 (53.09%), Postives = 59/81 (72.84%), Query Frame = -3
Query:  354 SFSPLLGNGEYVAGQILDLAEKLEQAENQLFHSRYGPLIAPPPRRKEEDSQLAKITRDSGKITVEQVHGLMSQVIKDILFN 596
            S SP+  N +Y+ GQI DL+EKLEQAE QL HSR   L      +K+E+S L+K+++DS K+T+EQV G+MSQV K+ +FN
Sbjct:  250 SSSPIFSNRDYITGQINDLSEKLEQAETQLSHSRSSIL-----DKKKEESLLSKVSKDSSKVTIEQVQGIMSQVFKNSIFN 325          
BLAST of DN621037 vs. ExPASy Swiss-Prot
Match: CSN5_DANRE (COP9 signalosome complex subunit 5 OS=Danio rerio GN=cops5 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.206e-15
Identity = 44/86 (51.16%), Postives = 56/86 (65.12%), Query Frame = -3
Query:  339 SFSPLLGNGEYVAGQILDLAEKLEQAENQLFHSRYGPLIAPPPRRKEEDSQLAKITRDSGKITVEQVHGLMSQVIKDILFNFVRQS 596
            S S LL N +Y  GQ+ DL+EKLEQAE QL    +  ++      ++ + +LAK TRDS K T+E +HGLMSQVIKD LFN V  S
Sbjct:  249 SSSSLLTNADYTTGQVFDLSEKLEQAEAQLGRGSF--MLGLDTHDRKSEDKLAKATRDSCKTTIEAIHGLMSQVIKDKLFNQVNTS 332          
BLAST of DN621037 vs. ExPASy Swiss-Prot
Match: CSN5_XENLA (COP9 signalosome complex subunit 5 OS=Xenopus laevis GN=cops5 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.678e-14
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = -3
Query:  354 SFSPLLGNGEYVAGQILDLAEKLEQAENQLFHSRYGPLIAPPPRRKEEDSQLAKITRDSGKITVEQVHGLMSQVIKDILFN 596
            S S LL N EY  GQ+ DL+EKLEQ+E QL    +  ++      ++ + +LAK TRDS K T+E +HGLMSQVIKD LFN
Sbjct:  249 SSSSLLTNAEYTTGQVFDLSEKLEQSEAQLGRGSF--MLGLESHDRKSEDKLAKATRDSCKTTIEAIHGLMSQVIKDKLFN 327          
BLAST of DN621037 vs. ExPASy Swiss-Prot
Match: CSN5_HUMAN (COP9 signalosome complex subunit 5 OS=Homo sapiens GN=COPS5 PE=1 SV=4)

HSP 1 Score: 77.7962 bits (190), Expect = 4.569e-14
Identity = 42/86 (48.84%), Postives = 56/86 (65.12%), Query Frame = -3
Query:  339 SFSPLLGNGEYVAGQILDLAEKLEQAENQLFHSRYGPLIAPPPRRKEEDSQLAKITRDSGKITVEQVHGLMSQVIKDILFNFVRQS 596
            S S LL N +Y  GQ+ DL+EKLEQ+E QL    +  ++      ++ + +LAK TRDS K T+E +HGLMSQVIKD LFN +  S
Sbjct:  251 SSSSLLTNADYTTGQVFDLSEKLEQSEAQLGRGSF--MLGLETHDRKSEDKLAKATRDSCKTTIEAIHGLMSQVIKDKLFNQINIS 334          
BLAST of DN621037 vs. ExPASy Swiss-Prot
Match: CSN5_XENTR (COP9 signalosome complex subunit 5 OS=Xenopus tropicalis GN=cops5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.967e-14
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = -3
Query:  354 SFSPLLGNGEYVAGQILDLAEKLEQAENQLFHSRYGPLIAPPPRRKEEDSQLAKITRDSGKITVEQVHGLMSQVIKDILFN 596
            S S LL N +Y  GQ+ DL+EKLEQ+E QL    +  ++      ++ + +LAK TRDS K T+E +HGLMSQVIKD LFN
Sbjct:  251 SSSSLLTNADYTTGQVFDLSEKLEQSEAQLGRGSF--MLGLETHDRKSEDKLAKATRDSCKTTIEAIHGLMSQVIKDKLFN 329          
BLAST of DN621037 vs. ExPASy Swiss-Prot
Match: CSN5_MOUSE (COP9 signalosome complex subunit 5 OS=Mus musculus GN=Cops5 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 5.967e-14
Identity = 41/81 (50.62%), Postives = 54/81 (66.67%), Query Frame = -3
Query:  354 SFSPLLGNGEYVAGQILDLAEKLEQAENQLFHSRYGPLIAPPPRRKEEDSQLAKITRDSGKITVEQVHGLMSQVIKDILFN 596
            S S LL N +Y  GQ+ DL+EKLEQ+E QL    +  ++      ++ + +LAK TRDS K T+E +HGLMSQVIKD LFN
Sbjct:  251 SSSSLLTNADYTTGQVFDLSEKLEQSEAQLGRGSF--MLGLETHDRKSEDKLAKATRDSCKTTIEAIHGLMSQVIKDKLFN 329          
BLAST of DN621037 vs. ExPASy Swiss-Prot
Match: CSN5_DROME (COP9 signalosome complex subunit 5 OS=Drosophila melanogaster GN=CSN5 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.527e-12
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = -3
Query:  348 SPLLGNGEYVAGQILDLAEKLEQAENQLFHSRYGPLIAPPPRRKEEDSQLAKITRDSGKITVEQVHGLMSQVIKDILFNFV 590
            S LL N EY  GQI+DL+EKLEQ+EN L               K  + +L+K TRD  + T+E +HGLM+Q++KD LFN V
Sbjct:  250 SGLLTNTEYTTGQIMDLSEKLEQSENFLGRGT-------DVNEKRSEDKLSKATRDCSRSTIELIHGLMAQIVKDKLFNKV 323          
The following BLAST results are available for this feature:
BLAST of DN621037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
CSN5B_ARATH1.279e-3273.79COP9 signalosome complex subunit 5b OS=Arabidopsis... [more]
CSN5A_ARATH3.259e-2867.65COP9 signalosome complex subunit 5a OS=Arabidopsis... [more]
CSN5_DICDI2.862e-1653.09COP9 signalosome complex subunit 5 OS=Dictyosteliu... [more]
CSN5_DANRE9.206e-1551.16COP9 signalosome complex subunit 5 OS=Danio rerio ... [more]
CSN5_XENLA2.678e-1451.85COP9 signalosome complex subunit 5 OS=Xenopus laev... [more]
CSN5_HUMAN4.569e-1448.84COP9 signalosome complex subunit 5 OS=Homo sapiens... [more]
CSN5_XENTR5.967e-1450.62COP9 signalosome complex subunit 5 OS=Xenopus trop... [more]
CSN5_MOUSE5.967e-1450.62COP9 signalosome complex subunit 5 OS=Mus musculus... [more]
CSN5_DROME9.527e-1246.91COP9 signalosome complex subunit 5 OS=Drosophila m... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06C14_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621037 ID=DN621037; Name=DN621037; organism=Citrus sinensis; type=EST; length=598bp
TTTTTTTTTTTTTTTTTACGGGGCAAATATGGGGTCTCTAATGACAATTA
ACGTTGTCTAATTTTCCAACTTACAAATACCAAATAGGGCAAAAACTGGA
ATTCCGTAATAAATCCACTATGAATGCAACAAGGATTTACATTAGGGCAA
AAGGTAACAAAACTTTGGCAGTCTCACCCTGAAATTCGTTGTAATGAATT
TTGAAATAAAAATCTTGGTCTGGCAGGGGAAGGGAGCATGGAAGGCAAAG
GCTTCTACTTTCTTGCTGCACCATTAAGTTGCAAAAATCAGGATTCAATC
ATAGGTTCAGGGTCAAATGGCTCAGCGTGAGTCTTGGGGGATTGTCGAAC
AAAATTGAAAAGGATGTCTTTGATAACCTGTGACATTAAACCATGAACCT
GCTCAACAGTTATCTTCCCACTGTCACGAGTGATCTTAGCAAGCTGTGAA
TCCTCCTCCTTCCTTCTTGGAGGGGGTGCTATTAAGGGCCCATAGCGAGA
GTGAAACAATTGATTCTCAGCTTGCTCCAGCTTTTCAGCTAAATCCAAAA
TTTGCCCTGCAACATACTCCCCATTACCAAGCAAAGGCGAAAATGAAA
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