DN621033

Overview
NameDN621033
Unique NameDN621033
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length713
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN621033_ssr7 microsatellite DN621033_ssr7:7..18. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12501 contig Csv1_Contig12501:21..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621033 vs. ExPASy Swiss-Prot
Match: PMGI_RICCO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ricinus communis PE=1 SV=2)

HSP 1 Score: 361.688 bits (927), Expect = 2.212e-99
Identity = 170/210 (80.95%), Postives = 192/210 (91.43%), Query Frame = 3
Query:   84 WKLKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGTGVDAQIASGGGRMYVTMDRYEND 713
            WKL +HP+L +   +A+VVLDGWGE KPD+YNCIHVA+TPTMDSFKK+AP RWRL++AHG+AVGLPTEDDMGNSEVGHNALGAGRI+AQGAKLVDLALASGKIY+ EGF Y+K  F+ GTLHLIGLLSDGGVHSRLDQLQLLLKGA+E GAKRIR+H+LTDGRDV+DG+SVGF ET+EKDL  LR  GVDAQ+ASGGGRMYVTMDRYEND
Sbjct:    5 WKLADHPKLPKGKTIAMVVLDGWGEAKPDQYNCIHVAETPTMDSFKKTAPERWRLIKAHGTAVGLPTEDDMGNSEVGHNALGAGRIYAQGAKLVDLALASGKIYEGEGFKYVKECFDKGTLHLIGLLSDGGVHSRLDQLQLLLKGAAEHGAKRIRVHVLTDGRDVIDGTSVGFAETLEKDLENLREKGVDAQVASGGGRMYVTMDRYEND 214          
BLAST of DN621033 vs. ExPASy Swiss-Prot
Match: PMGI_MESCR (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mesembryanthemum crystallinum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.098e-98
Identity = 173/211 (81.99%), Postives = 191/211 (90.52%), Query Frame = 3
Query:   81 NWKLKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGTGVDAQIASGGGRMYVTMDRYEND 713
            +WKL +HP+L +   +A+VVLDGWGE   ++YNCIHVA+TPTMDS K+ AP +WRL+RAHG AVGLPTEDDMGNSEVGHNALGAGRI+AQGAKLVDLAL SGKIY  EGFNYIK SFET TLHLIGLLSDGGVHSRLDQLQLLLKG++ERGAKRIR+HILTDGRDVLDGSSVGFVET+E DLA+LR  GVDAQIASGGGRMYVTMDRYEND
Sbjct:    7 SWKLADHPKLPKGKTLAMVVLDGWGEASANQYNCIHVAETPTMDSLKQGAPEKWRLIRAHGKAVGLPTEDDMGNSEVGHNALGAGRIYAQGAKLVDLALESGKIYDGEGFNYIKESFETNTLHLIGLLSDGGVHSRLDQLQLLLKGSAERGAKRIRVHILTDGRDVLDGSSVGFVETLENDLAQLRAKGVDAQIASGGGRMYVTMDRYEND 217          
BLAST of DN621033 vs. ExPASy Swiss-Prot
Match: PMGI_MAIZE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Zea mays PE=1 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 1.214e-97
Identity = 171/211 (81.04%), Postives = 188/211 (89.10%), Query Frame = 3
Query:   81 NWKLKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGTGVDAQIASGGGRMYVTMDRYEND 713
            +W L +HP+L +   VAVVVLDGWGE  PD+YNCIHVA TP MDS K  AP +WRL++AHG+AVGLP++DDMGNSEVGHNALGAGRIFAQGAKLVD ALASGKIY  +GFNYIK SFE+GTLHLIGLLSDGGVHSRLDQLQLLLKG SERGAK+IR+HILTDGRDVLDGSS+GFVET+E DL ELR  GVDAQIASGGGRMYVTMDRYEND
Sbjct:    7 SWTLPDHPKLPKGKSVAVVVLDGWGEANPDQYNCIHVAQTPVMDSLKNGAPEKWRLVKAHGTAVGLPSDDDMGNSEVGHNALGAGRIFAQGAKLVDQALASGKIYDGDGFNYIKESFESGTLHLIGLLSDGGVHSRLDQLQLLLKGVSERGAKKIRVHILTDGRDVLDGSSIGFVETLENDLLELRAKGVDAQIASGGGRMYVTMDRYEND 217          
BLAST of DN621033 vs. ExPASy Swiss-Prot
Match: PMG2_ARATH (Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 OS=Arabidopsis thaliana GN=At3g08590 PE=2 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 1.136e-95
Identity = 166/211 (78.67%), Postives = 185/211 (87.68%), Query Frame = 3
Query:   81 NWKLKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGTGVDAQIASGGGRMYVTMDRYEND 713
            NWKL +HP+L +   + ++VLDGWGE  PD+YNCIH A TP MDS K   P  WRL++AHG+AVGLP+EDDMGNSEVGHNALGAGRI+AQGAKLVDLALASGKIY+DEGF YI  SFE GT+HLIGLLSDGGVHSRLDQ+QLLLKG +ERGAKRIR+HILTDGRDVLDGSSVGFVET+E DLA LR  GVDAQ+ASGGGRMYVTMDRYEND
Sbjct:    8 NWKLADHPKLPKGKTIGLIVLDGWGESDPDQYNCIHKAPTPAMDSLKDGKPDTWRLIKAHGTAVGLPSEDDMGNSEVGHNALGAGRIYAQGAKLVDLALASGKIYEDEGFKYISQSFEKGTVHLIGLLSDGGVHSRLDQVQLLLKGFAERGAKRIRVHILTDGRDVLDGSSVGFVETLEADLAALRAKGVDAQVASGGGRMYVTMDRYEND 218          
BLAST of DN621033 vs. ExPASy Swiss-Prot
Match: PMGI_TOBAC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 5.637e-95
Identity = 165/212 (77.83%), Postives = 188/212 (88.68%), Query Frame = 3
Query:   78 DNWKLKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGTGVDAQIASGGGRMYVTMDRYEND 713
            D WKLK+HP+L +   VAV+VLDGWGE KP+++N IHVA+TP M S K  AP +WRL++AHG+AVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIY+ EGF Y+K  FE GTLHLIGLLSDGGVHSRLDQ+QLLLKGA++ GAKRIR+H LTDGRDVLDGSSVGF+ET+E  LA+LR  G+DAQ+ASGGGRMYVTMDRYEND
Sbjct:    6 DAWKLKDHPKLPKGKTVAVIVLDGWGEAKPNEFNAIHVAETPVMYSLKNGAPEKWRLIKAHGNAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYEGEGFKYVKECFEKGTLHLIGLLSDGGVHSRLDQVQLLLKGAAKHGAKRIRVHALTDGRDVLDGSSVGFMETLENSLAQLREKGIDAQVASGGGRMYVTMDRYEND 217          
BLAST of DN621033 vs. ExPASy Swiss-Prot
Match: PMG1_ARATH (2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 OS=Arabidopsis thaliana GN=PGM1 PE=2 SV=3)

HSP 1 Score: 340.887 bits (873), Expect = 4.040e-93
Identity = 162/210 (77.14%), Postives = 182/210 (86.67%), Query Frame = 3
Query:   84 WKLKEHPQLSRNNIVAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGTGVDAQIASGGGRMYVTMDRYEND 713
            WKL +HP+L +   +AV+VLDGWGE  PD+YNCIH A TP MDS K  AP  W L++AHG+AVGLP+EDDMGNSEVGHNALGAGRIFAQGAKL D ALASGKI++ EGF Y+  SFET TLHL+GLLSDGGVHSRLDQLQLL+KG++ERGAKRIR+HILTDGRDVLDGSSVGFVET+E DL  LR  GVDAQIASGGGRMYVT+DRYEND
Sbjct:    7 WKLDDHPKLPKGKTIAVIVLDGWGESAPDQYNCIHNAPTPAMDSLKHGAPDTWTLIKAHGTAVGLPSEDDMGNSEVGHNALGAGRIFAQGAKLCDQALASGKIFEGEGFKYVSESFETNTLHLVGLLSDGGVHSRLDQLQLLIKGSAERGAKRIRVHILTDGRDVLDGSSVGFVETLEADLVALRENGVDAQIASGGGRMYVTLDRYEND 216          
BLAST of DN621033 vs. ExPASy Swiss-Prot
Match: PMGI_PRUDU (2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Fragment) OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.498e-66
Identity = 126/146 (86.30%), Postives = 133/146 (91.10%), Query Frame = 3
Query:  276 LPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGTGVDAQIASGGGRMYVTMDRYEND 713
            LPTEDDMGNSEVGHNALGAGRIFAQGAKLVD AL +GK+Y+ EGF YIK SF T TLHLIGLLSDGGVHSRLDQL LL+KGASERGAKRIR+HILTDGRDVLDGSSVGF ET+E  LA+LR  GVDAQIASGGGRMYVTMDRYEND
Sbjct:    1 LPTEDDMGNSEVGHNALGAGRIFAQGAKLVDSALETGKLYEGEGFKYIKESFPTNTLHLIGLLSDGGVHSRLDQLLLLVKGASERGAKRIRVHILTDGRDVLDGSSVGFAETLENYLAQLREKGVDAQIASGGGRMYVTMDRYEND 146          
BLAST of DN621033 vs. ExPASy Swiss-Prot
Match: GPMI_LEPIN (Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Leptospira interrogans GN=gpmI PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.121e-41
Identity = 94/204 (46.08%), Postives = 126/204 (61.76%), Query Frame = 3
Query:  114 RNNIVAVVVLDGWGEFK--PDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGTGVDAQIASGGGRMYVTMDRYEND 713
            R+  V +++LDG G     P+  N I  A  P ++      P     ++AHG AVG+P++DDMGNSEVGHN LG+GRIF QGAKLV  ++ASG I+  + +  +         TLHL+GL SDG VHS +D  + L+  A      +IRLHIL DGRDV + S++ ++   E  L  LR +G D +IASGGGRM +TMDRYE D
Sbjct:   14 RSRKVLLIILDGVGYSPKGPESGNAIAGAKLPFLNRVWNQFPTLH--IQAHGKAVGMPSDDDMGNSEVGHNVLGSGRIFDQGAKLVSNSIASGDIFNGQAWKEVIGNSKKNNSTLHLLGLFSDGNVHSHIDHTKALISQAILEKVPKIRLHILLDGRDVPEKSALDYLNPFETWLDSLRKSGTDIRIASGGGRMTITMDRYEAD 215          
BLAST of DN621033 vs. ExPASy Swiss-Prot
Match: GPMI_LEPIC (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=gpmI PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.121e-41
Identity = 94/204 (46.08%), Postives = 126/204 (61.76%), Query Frame = 3
Query:  114 RNNIVAVVVLDGWGEFK--PDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYI--KPSFETGTLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGTGVDAQIASGGGRMYVTMDRYEND 713
            R+  V +++LDG G     P+  N I  A  P ++      P     ++AHG AVG+P++DDMGNSEVGHN LG+GRIF QGAKLV  ++ASG I+  + +  +         TLHL+GL SDG VHS +D  + L+  A      +IRLHIL DGRDV + S++ ++   E  L  LR +G D +IASGGGRM +TMDRYE D
Sbjct:   14 RSRKVLLIILDGVGYSPKGPESGNAIAGAKLPFLNRVWNQFPTLH--IQAHGKAVGMPSDDDMGNSEVGHNVLGSGRIFDQGAKLVSNSIASGDIFNGQAWKEVIGNSKKNNSTLHLLGLFSDGNVHSHIDHTKALISQAILEKVPKIRLHILLDGRDVPEKSALDYLNPFETWLNSLRKSGTDIRIASGGGRMTITMDRYEAD 215          
BLAST of DN621033 vs. ExPASy Swiss-Prot
Match: GPMI_PROMT (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Prochlorococcus marinus (strain NATL2A) GN=gpmI PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.375e-29
Identity = 78/194 (40.21%), Postives = 112/194 (57.73%), Query Frame = 3
Query:  126 VAVVVLDGWGEFKPDKYNCIHVADTPTMDSFKKSAPGRWRLLRAHGSAVGLPTEDDMGNSEVGHNALGAGRIFAQGAKLVDLALASGKIYQDEGFNYIKPSFETG--TLHLIGLLSDGGVHSRLDQLQLLLKGASERGAKRIRLHILTDGRDVLDGSSVGFVETIEKDLAELRGTGVDAQIASGGGRMYVTMDR 701
            V + +LDGWG  +  ++N +  A TP +D+   + P    L+ A G+ VGLP E  MGNSEVGH  +GAGRI  Q    +   +   K+  +   N    S + G  TLH++GL SDGGVHS +  L  L++ A+ +G K + LH+ TDGRD    S+  ++ TIE   A+++ TGV  +I+S  GR Y  MDR
Sbjct:   18 VVLAILDGWGYREEIEHNAVRQASTPVIDALWHAYPHT--LIEASGADVGLPDEQ-MGNSEVGHLTIGAGRIIQQELVRISNTVKENKLIANPALNQFSQSLKKGGGTLHIMGLCSDGGVHSHIKHLCGLIEWAASKGLKNVSLHLFTDGRDTSAKSATKYINTIE---AKIKATGV-GEISSLCGR-YWAMDR 203          
The following BLAST results are available for this feature:
BLAST of DN621033 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
PMGI_RICCO2.212e-9980.952,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_MESCR1.098e-9881.992,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_MAIZE1.214e-9781.042,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMG2_ARATH1.136e-9578.67Probable 2,3-bisphosphoglycerate-independent phosp... [more]
PMGI_TOBAC5.637e-9577.832,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMG1_ARATH4.040e-9377.142,3-bisphosphoglycerate-independent phosphoglycera... [more]
PMGI_PRUDU5.498e-6686.302,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_LEPIN6.121e-4146.08Probable 2,3-bisphosphoglycerate-independent phosp... [more]
GPMI_LEPIC6.121e-4146.082,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PROMT5.375e-2940.212,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06C11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621033 ID=DN621033; Name=DN621033; organism=Citrus sinensis; type=EST; length=713bp
TATCTCTTGTTTGTTTGTTAGCTTTCTACGGACGCGCGATTCGCCTTCAA
TCCAAAACTAATTAAGAGTGAAAGATGGATAACTGGAAATTAAAAGAGCA
TCCACAGCTGTCGAGGAATAACATTGTAGCCGTTGTGGTGTTGGATGGCT
GGGGCGAGTTCAAGCCCGACAAGTATAACTGCATCCATGTCGCCGACACT
CCCACCATGGACTCTTTCAAGAAGTCTGCCCCTGGGAGGTGGAGGTTGCT
CCGAGCTCACGGTAGTGCTGTGGGGCTTCCAACTGAAGATGACATGGGTA
ACAGTGAAGTCGGTCATAATGCACTCGGTGCTGGTCGCATTTTTGCTCAA
GGTGCAAAGCTTGTTGACCTTGCTCTGGCCTCTGGGAAAATCTATCAAGA
TGAGGGATTTAATTACATTAAGCCATCCTTTGAAACCGGCACATTGCACC
TTATTGGGTTACTGAGTGATGGTGGAGTACACTCTAGGCTTGATCAACTT
CAGTTGTTGCTAAAAGGAGCTAGTGAGCGTGGTGCTAAAAGAATTCGTCT
TCATATTCTTACTGACGGGCGTGATGTTTTGGATGGTTCAAGCGTAGGAT
TCGTAGAAACTATTGAGAAAGATCTTGCAGAATTGCGTGGGACAGGTGTT
GACGCGCAGATTGCATCTGGAGGAGGCCGCATGTACGTCACGATGGACCG
TTATGAGAATGAT
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