DN621026

Overview
NameDN621026
Unique NameDN621026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621026 vs. ExPASy Swiss-Prot
Match: ODBA_DICDI (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.736e-27
Identity = 57/109 (52.29%), Postives = 74/109 (67.89%), Query Frame = 3
Query:  384 VPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSDDDFILPQYREPGVLLWRGYTLQQFANQVFANKAD 710
            +PC+ ++D  G + K       SKE  +KMY+ M+TL VMDS+LY+ QRQGR SFY+T+ GEEAI+IGSAAAL   D I  QYRE GV +WRG+T+    NQ   N+ D
Sbjct:   64 IPCYTIMDQEGVVSKPDQDPNFSKEEVIKMYTTMLTLNVMDSILYDVQRQGRISFYMTSFGEEAIHIGSAAALEMSDTIFAQYRETGVFMWRGFTINDIINQCCTNEHD 172          
BLAST of DN621026 vs. ExPASy Swiss-Prot
Match: ODBA_PANTR (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan troglodytes GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.470e-26
Identity = 56/131 (42.75%), Postives = 81/131 (61.83%), Query Frame = 3
Query:  318 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSDDDFILPQYREPGVLLWRGYTLQQFANQVFANKAD 710
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + KE  +K+Y  M  L  MD +LYE+QRQGR SFY+T  GEE  ++GSAAAL + D +  QYRE GVL++R Y L+ F  Q + N +D
Sbjct:   54 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 184          
BLAST of DN621026 vs. ExPASy Swiss-Prot
Match: ODBA_MACFA (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.470e-26
Identity = 56/131 (42.75%), Postives = 81/131 (61.83%), Query Frame = 3
Query:  318 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSDDDFILPQYREPGVLLWRGYTLQQFANQVFANKAD 710
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + KE  +K+Y  M  L  MD +LYE+QRQGR SFY+T  GEE  ++GSAAAL + D +  QYRE GVL++R Y L+ F  Q + N +D
Sbjct:   54 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 184          
BLAST of DN621026 vs. ExPASy Swiss-Prot
Match: ODBA_HUMAN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo sapiens GN=BCKDHA PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.470e-26
Identity = 56/131 (42.75%), Postives = 81/131 (61.83%), Query Frame = 3
Query:  318 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSDDDFILPQYREPGVLLWRGYTLQQFANQVFANKAD 710
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + KE  +K+Y  M  L  MD +LYE+QRQGR SFY+T  GEE  ++GSAAAL + D +  QYRE GVL++R Y L+ F  Q + N +D
Sbjct:   54 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 184          
BLAST of DN621026 vs. ExPASy Swiss-Prot
Match: ODBA_BOVIN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Bos taurus GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.470e-26
Identity = 56/131 (42.75%), Postives = 80/131 (61.07%), Query Frame = 3
Query:  318 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSDDDFILPQYREPGVLLWRGYTLQQFANQVFANKAD 710
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + +E  +K Y  M  L  MD +LYE+QRQGR SFY+T  GEE  ++GSAAAL D D +  QYRE GVL++R Y L+ F  Q + N +D
Sbjct:   64 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEKVLKFYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDDTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSD 194          
BLAST of DN621026 vs. ExPASy Swiss-Prot
Match: ODBA_RAT (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial (Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.295e-26
Identity = 55/131 (41.98%), Postives = 80/131 (61.07%), Query Frame = 3
Query:  318 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSDDDFILPQYREPGVLLWRGYTLQQFANQVFANKAD 710
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + +E  +K+Y  M  L  MD +LYE+QRQGR SFY+T  GEE  ++GSAAAL   D +  QYRE GVL++R Y L+ F  Q + N +D
Sbjct:   50 FPGASAEFVDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKLYRSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALERTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSD 180          
BLAST of DN621026 vs. ExPASy Swiss-Prot
Match: ODBA_MOUSE (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus musculus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.772e-25
Identity = 54/131 (41.22%), Postives = 79/131 (60.31%), Query Frame = 3
Query:  318 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSDDDFILPQYREPGVLLWRGYTLQQFANQVFANKAD 710
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + +E  +K Y  M  L  MD +LYE+QR+GR SFY+T  GEE  ++GSAAAL   D +  QYRE GVL++R Y L+ F +Q + N  D
Sbjct:   51 FPGASAEFVDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKFYRSMTLLNTMDRILYESQREGRISFYMTNYGEEGTHVGSAAALERTDLVFGQYREAGVLMYRDYPLELFMSQCYGNVND 181          
BLAST of DN621026 vs. ExPASy Swiss-Prot
Match: ODBA_PSEAE (2-oxoisovalerate dehydrogenase subunit alpha OS=Pseudomonas aeruginosa GN=bkdA1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 42/115 (36.52%), Postives = 63/115 (54.78%), Query Frame = 3
Query:  366 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSDDDFILPQYREPGVLLWRGYTLQQFANQVFANKAD 710
            E+S+      RVLDD+G  + G    Q+S E  ++    M+  ++ D+ +  AQRQ + SFY+  +GEEAI      AL D D   P YR+ G+L+ R Y L     Q+ +N+AD
Sbjct:   46 ETSDLAYSLVRVLDDDGHAV-GPWNPQLSNEQLLRGMRAMLKTRLFDARMLTAQRQKKLSFYMQCLGEEAIATAHTLALRDGDMCFPTYRQQGILITREYPLVDMICQLLSNEAD 159          
BLAST of DN621026 vs. ExPASy Swiss-Prot
Match: ODPA_BACST (Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus stearothermophilus GN=pdhA PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 36/104 (34.62%), Postives = 56/104 (53.85%), Query Frame = 3
Query:  366 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSDDDFILPQYREPGVLLWRGYTLQQ 677
            E   ++ P F++L++ GE++      ++S E   ++   MV  +++D       RQGR  FY  T G+EA  I S  AL  +DFILP YR+   ++W G  L Q
Sbjct:   15 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPLYQ 118          
BLAST of DN621026 vs. ExPASy Swiss-Prot
Match: ODPA_BACSU (Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus subtilis GN=pdhA PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 33/104 (31.73%), Postives = 57/104 (54.81%), Query Frame = 3
Query:  366 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSDDDFILPQYREPGVLLWRGYTLQQ 677
            ++ +K+   F++L++ GE++  +    ++ +   ++   MV  +V+D       RQGR  FY  T G+EA  I +  AL  +DF+LP YR+   L+W G  L Q
Sbjct:   17 DAIKKQFETFQILNEKGEVVNEAAMPDLTDDQLKELMRRMVFTRVLDQRSISLNRQGRLGFYAPTAGQEASQIATHFALEKEDFVLPGYRDVPQLIWHGLPLYQ 120          
The following BLAST results are available for this feature:
BLAST of DN621026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
ODBA_DICDI1.736e-2752.292-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_PANTR1.470e-2642.752-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_MACFA1.470e-2642.752-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_HUMAN1.470e-2642.752-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_BOVIN1.470e-2642.752-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_RAT7.295e-2641.982-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_MOUSE2.772e-2541.222-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_PSEAE1.208e-1236.522-oxoisovalerate dehydrogenase subunit alpha OS=Ps... [more]
ODPA_BACST1.578e-1234.62Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_BACSU3.886e-1131.73Pyruvate dehydrogenase E1 component subunit alpha ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06C07_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621026 ID=DN621026; Name=DN621026; organism=Citrus sinensis; type=EST; length=711bp
CATTTTCTTCCTTCTTTCTTACCTTCGTATCTTTGCCGTTGTTCAATATC
GAAAAAAATTAAATGGCGATTTGGTTAACAAAATCAAGAGCCATGGCCCA
ATGCTTACGGCAAAGAGTTGGTTTGCTGAGGATATTAAGTGGCCAGAGTT
GTTCATCCCCATCAACAATAATATTCCCACTTCAGCAATATAATTCATCA
TCACTTCCAAGCAAAACCCTTTTCTCGCCGGGGCGTTCCGAGTCCACCGT
TGCTTCCAATCAGCTGGATTCTTTGTCTTCCAGTGACAGCGATGATGATC
ATCATCAGGTCTTGGATTTTCCCGGAGGCAAAGTTGGATATACTTCTGAA
ATGAGGTTCATTCCTGAGTCTTCAGAGAAAAGAGTGCCTTGTTTTCGAGT
TCTTGATGACAATGGAGAGCTAATCAAGGGCAGTGATTTTCAACAGGTGA
GCAAGGAAGTTGCTGTAAAGATGTATAGCCATATGGTCACACTGCAGGTA
ATGGACTCTGTATTGTACGAAGCACAAAGGCAAGGGAGATTTTCTTTCTA
TCTTACAACAATTGGTGAAGAAGCAATCAACATAGGATCAGCAGCTGCAC
TCAGCGATGATGATTTTATCTTGCCTCAGTACCGAGAGCCTGGAGTACTC
TTATGGCGTGGCTACACATTGCAACAATTTGCAAACCAGGTGTTTGCAAA
CAAGGCTGATG
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