DN621025

Overview
NameDN621025
Unique NameDN621025
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621025 vs. ExPASy Swiss-Prot
Match: ODBA_MOUSE (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus musculus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.401e-50
Identity = 90/177 (50.85%), Postives = 124/177 (70.06%), Query Frame = -2
Query:  196 RNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTYPQDYPTD 726
            RNNG+AIST  SEQ+R DGI  +G  YGI+SIRVDGND  AVY A + AR  A++E +P L+EA+TYR+GHHSTSDDS+ YR++DE+ YW  +  PI+R R ++  QGWW E++E   R   +K++++A + AE+  KP  + LFSDVY   P+ L  Q++ L   +QTY + YP D
Sbjct:  262 RNNGYAISTPTSEQYRGDGIAARGPGYGIKSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRQYLLNQGWWDEEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLLFSDVYQEMPAQLRRQQESLARHLQTYGEHYPLD 438          
BLAST of DN621025 vs. ExPASy Swiss-Prot
Match: ODBA_PANTR (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan troglodytes GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.508e-50
Identity = 89/177 (50.28%), Postives = 124/177 (70.06%), Query Frame = -2
Query:  196 RNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTYPQDYPTD 726
            RNNG+AIST  SEQ+R DGI  +G  YGI SIRVDGND  AVY A + AR  A++E +P L+EA+TYR+GHHSTSDDS+ YR++DE+ YW  +  P++R R+++  QGWW E++E   R   +K++++A + AE+  KP    LFSDVY   P+ L +Q++ L   +QTY + YP D
Sbjct:  265 RNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPVSRLRHYLLSQGWWDEEQEKAWRKQSRKKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLD 441          
BLAST of DN621025 vs. ExPASy Swiss-Prot
Match: ODBA_DICDI (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 7.508e-50
Identity = 90/176 (51.14%), Postives = 130/176 (73.86%), Query Frame = -2
Query:  202 RNNGWAISTNISEQFRSDGIVVKG-RAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTYPQDYP 726
            RNN WAIST   EQ++ DGI  +G   YG+++IRVDGND  AVY   + AR++A+ E+ PVL+EA+TYRVGHHSTSDDS++YRT++EI  WK  ++PI+R RN++  +GWWS+ +E E  ++ +  + +++  AEK  KP+I E+F+DVYD P  NL EQ+K+L E ++ YP +YP
Sbjct:  253 RNNKWAISTPSKEQYKGDGIAGRGPNGYGMKTIRVDGNDIWAVYNVTKLARKIAVEEQVPVLIEAMTYRVGHHSTSDDSSRYRTVEEINAWKEGKNPISRLRNYMNHKGWWSDAQEKETIANARTTVRESLVNAEKQYKPSINEIFTDVYDKPTPNLIEQQKELIEHLKLYPDEYP 428          
BLAST of DN621025 vs. ExPASy Swiss-Prot
Match: ODBA_RAT (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial (Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.805e-50
Identity = 90/177 (50.85%), Postives = 123/177 (69.49%), Query Frame = -2
Query:  196 RNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTYPQDYPTD 726
            RNNG+AIST  SEQ+R DGI  +G  YGI SIRVDGND  AVY A + AR  A++E +P L+EA+TYR+GHHSTSDDS+ YR++DE+ YW  +  PI+R R ++  QGWW E++E   R   +K++++A + AE+  KP  + LFSDVY   P+ L  Q++ L   +QTY + YP D
Sbjct:  261 RNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRQYLLNQGWWDEEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLLFSDVYQEMPAQLRRQQESLARHLQTYGEHYPLD 437          
BLAST of DN621025 vs. ExPASy Swiss-Prot
Match: ODBA_HUMAN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo sapiens GN=BCKDHA PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 1.281e-49
Identity = 89/177 (50.28%), Postives = 124/177 (70.06%), Query Frame = -2
Query:  196 RNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTYPQDYPTD 726
            RNNG+AIST  SEQ+R DGI  +G  YGI SIRVDGND  AVY A + AR  A++E +P L+EA+TYR+GHHSTSDDS+ YR++DE+ YW  +  PI+R R+++  QGWW E++E   R   ++++++A + AE+  KP    LFSDVY   P+ L +Q++ L   +QTY + YP D
Sbjct:  265 RNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRRKVMEAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLD 441          
BLAST of DN621025 vs. ExPASy Swiss-Prot
Match: ODBA_MACFA (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.184e-49
Identity = 89/177 (50.28%), Postives = 124/177 (70.06%), Query Frame = -2
Query:  196 RNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTYPQDYPTD 726
            RNNG+AIST  SEQ+R DGI  +G  YGI SIRVDGND  AVY A + AR  A++E +P L+EA+TYR+GHHSTSDDS+ YR++DE+ YW  +  PI+R R+++  QGWW E++E   R   +K++++A + AE+  KP    LFSDVY   P+ L +Q++ L   +QTY + YP +
Sbjct:  265 RNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHYLLSQGWWDEEQEKAWRKQSRKKVMKAFEQAERKPKPNPNLLFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLE 441          
BLAST of DN621025 vs. ExPASy Swiss-Prot
Match: ODBA_BOVIN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Bos taurus GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.301e-49
Identity = 87/177 (49.15%), Postives = 125/177 (70.62%), Query Frame = -2
Query:  196 RNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHSTSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKEIIQTYPQDYPTD 726
            RNNG+AIST  SEQ+R DGI  +G  YGI SIRVDGND  AVY A + AR  A++E +P L+EA+TYR+GHHSTSDDS+ YR++DE+ YW  +  PI+R R+ ++ +GWW +++E   R   +K++++A + AE+  KP  + +FSDVY   P+ L +Q++ L   +QTY + YP D
Sbjct:  275 RNNGYAISTPTSEQYRGDGIAARGPGYGILSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVDEVNYWDKQDHPISRLRHHLQSRGWWDDEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLIFSDVYQEMPAQLRKQQESLARHLQTYGEHYPLD 451          
BLAST of DN621025 vs. ExPASy Swiss-Prot
Match: ODPA_STAES (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.966e-30
Identity = 71/166 (42.77%), Postives = 104/166 (62.65%), Query Frame = -2
Query:  232 RNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHS-TSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKE 726
            +NN +AIST  S+Q  ++ +  K  + GI  I+VDG DALAVY A   ARE A++ + P ++E LTYR G H+   DD T+YRT DE   W+ ++ P+ RFR ++E +G W+E +E E+    K ++  AI+ A+ TEK  +T L   +Y+  P NLAEQ +  KE
Sbjct:  202 QNNNYAISTPRSKQTAAETLAQKAISVGIPGIQVDGMDALAVYQATLEARERAVAGEGPTVIETLTYRYGPHTMAGDDPTRYRTSDEDAEWE-KKDPLVRFRKYLEAKGLWNEDKENEVVERAKSEIKAAIKEADNTEKQTVTSLMDIMYEEMPQNLAEQYEIYKE 366          
BLAST of DN621025 vs. ExPASy Swiss-Prot
Match: ODPA_STAEQ (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.966e-30
Identity = 71/166 (42.77%), Postives = 104/166 (62.65%), Query Frame = -2
Query:  232 RNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHS-TSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKE 726
            +NN +AIST  S+Q  ++ +  K  + GI  I+VDG DALAVY A   ARE A++ + P ++E LTYR G H+   DD T+YRT DE   W+ ++ P+ RFR ++E +G W+E +E E+    K ++  AI+ A+ TEK  +T L   +Y+  P NLAEQ +  KE
Sbjct:  202 QNNNYAISTPRSKQTAAETLAQKAISVGIPGIQVDGMDALAVYQATLEARERAVAGEGPTVIETLTYRYGPHTMAGDDPTRYRTSDEDAEWE-KKDPLVRFRKYLEAKGLWNEDKENEVVERAKSEIKAAIKEADNTEKQTVTSLMDIMYEEMPQNLAEQYEIYKE 366          
BLAST of DN621025 vs. ExPASy Swiss-Prot
Match: ODPA_STAAW (Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus aureus (strain MW2) GN=pdhA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.966e-30
Identity = 71/166 (42.77%), Postives = 104/166 (62.65%), Query Frame = -2
Query:  232 RNNGWAISTNISEQFRSDGIVVKGRAYGIRSIRVDGNDALAVYTAVQAAREMAISEKRPVLVEALTYRVGHHS-TSDDSTKYRTLDEIEYWKTERSPINRFRNWVERQGWWSEQEETELRSSIKKQLLQAIQVAEKTEKPAITELFSDVYDVPPSNLAEQEKQLKE 726
            +NN +AIST  S+Q  ++ +  K  A GI  I+VDG DALAVY A + AR+ A++ + P L+E +TYR G H+   DD T+YRT DE   W+ ++ P+ RFR ++E +G W+E +E E+    K  +  AI+ A+ TEK  +T L   +Y+  P NLAEQ +  KE
Sbjct:  202 QNNNYAISTPRSKQTAAETLAQKAIAVGIPGIQVDGMDALAVYQATKEARDRAVAGEGPTLIETMTYRYGPHTMAGDDPTRYRTSDEDAEWE-KKDPLVRFRKFLENKGLWNEDKENEVIERAKADIKAAIKEADNTEKQTVTSLMEIMYEDMPQNLAEQYEIYKE 366          
The following BLAST results are available for this feature:
BLAST of DN621025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODBA_MOUSE4.401e-5050.852-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_PANTR7.508e-5050.282-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_DICDI7.508e-5051.142-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_RAT9.805e-5050.852-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_HUMAN1.281e-4950.282-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_MACFA2.184e-4950.282-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_BOVIN8.301e-4949.152-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODPA_STAES2.966e-3042.77Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAEQ2.966e-3042.77Pyruvate dehydrogenase E1 component subunit alpha ... [more]
ODPA_STAAW2.966e-3042.77Pyruvate dehydrogenase E1 component subunit alpha ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06C07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621025 ID=DN621025; Name=DN621025; organism=Citrus sinensis; type=EST; length=727bp
TTTTTTTTTTTTTTTTACTATAATTACGTATAGATTGCTTTATTACTATC
AAAATGTACATAGCATGTAGAAACTTACTGACGCTACATTTTTCATTTAT
ATGGAGTTTTCAGGAGTTTTATTTTTTATCTTTCCTTTTCCCCCCTTTAT
TCTACACATTTTATTGAAGTAGCCACGTGAAATCTATACAGGAACATCAG
TGGGATAGTCTTGTGGATATGTTTGAATAATTTCTTTCAGCTGTTTCTCT
TGCTCAGCAAGGTTTGATGGGGGAACATCATATACATCGGAGAACAGTTC
TGTAATCGCCGGCTTTTCTGTTTTCTCTGCAACTTGAATTGCTTGCAACA
ACTGTTTCTTGATGCTACTTCGAAGCTCGGTTTCTTCTTGCTCACTCCAC
CAGCCTTGCCTTTCCACCCAATTCCTAAATCTATTGATAGGACTTCGTTC
TGTTTTCCAGTACTCGATTTCATCAAGTGTTCGGTATTTGGTGGAATCAT
CTGAGGTTGAGTGATGTCCTACTCGATATGTAAGGGCCTCTACTAACACA
GGTCTCTTTTCACTGATAGCCATTTCACGAGCTGCCTGAACTGCAGTATA
AACAGCAAGTGCATCATTTCCATCTACTCGTATGCTTCGGATGCCATATG
CACGACCCTTAACAACAATACCATCGCTTCGAAATTGTTCTGATATATTG
GTACTAATGGCCCAGCCATTGTTGCGA
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