DN621024

Overview
NameDN621024
Unique NameDN621024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621024 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.138e-41
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = -3
Query:  425 VPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 679
            VPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL
Sbjct:  261 VPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 345          
BLAST of DN621024 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.047e-39
Identity = 79/85 (92.94%), Postives = 83/85 (97.65%), Query Frame = -3
Query:  425 VPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 679
            VPGMKALDMN AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG PNALDG+YVGG+HPELIL
Sbjct:  257 VPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELIL 341          
BLAST of DN621024 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.079e-35
Identity = 74/85 (87.06%), Postives = 79/85 (92.94%), Query Frame = -3
Query:  425 VPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 679
            VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+L
Sbjct:  254 VPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVL 338          
BLAST of DN621024 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.541e-33
Identity = 71/85 (83.53%), Postives = 78/85 (91.76%), Query Frame = -3
Query:  425 VPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 679
            VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT    +  EL++
Sbjct:  260 VPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMI 344          
BLAST of DN621024 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.655e-33
Identity = 69/74 (93.24%), Postives = 73/74 (98.65%), Query Frame = -3
Query:  458 VPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGT 679
            VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT
Sbjct:  257 VPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT 330          
BLAST of DN621024 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = -3
Query:  491 GMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 673
            GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM++SG KAA  ALK
Sbjct:  253 GMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALK 313          
BLAST of DN621024 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.497e-17
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = -3
Query:  491 GMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 673
            GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM +SG KAA  ALK
Sbjct:  249 GMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309          
BLAST of DN621024 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.267e-16
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = -3
Query:  491 GMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 673
            GM+ LDMNSAEDAIV+ TREV  G+I+ GME++EIDG  RMGPTFGAM++SG KAA  ALK
Sbjct:  256 GMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALK 316          
BLAST of DN621024 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.655e-16
Identity = 41/74 (55.41%), Postives = 56/74 (75.68%), Query Frame = -3
Query:  449 MKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVG 670
            M+ LDM  AED I   TRE++PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL+SL +    +G  VG
Sbjct:  262 MRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEGEVVG 335          
BLAST of DN621024 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.287e-16
Identity = 44/73 (60.27%), Postives = 52/73 (71.23%), Query Frame = -3
Query:  452 MKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYV 670
            M+ LDMN AED IV+ TREV PGMIV GME++E DGA RMGPTFG MM SG KAA  AL    +  A++  Y+
Sbjct:  256 MRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVNEKYL 328          
The following BLAST results are available for this feature:
BLAST of DN621024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
THI4_CITSI1.138e-41100.00Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL4.047e-3992.94Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH2.079e-3587.06Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE2.541e-3383.53Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE9.655e-3393.24Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_FUSSH8.773e-1872.13Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSOX1.497e-1772.13Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR1.267e-1670.49Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI4_UROFA1.655e-1655.41Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI2_SCHPO6.287e-1660.27Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06C06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621024 ID=DN621024; Name=DN621024; organism=Citrus sinensis; type=EST; length=681bp
TTACAGAGTAAGCTCAGATCTTCATCATTGATCTTAATCACATCAGCACT
TTCCCATTGGCTGATGCCTCAAGTTATAAACATACAAAGCAAAGAAAAGG
GAACAGCCCAAGGGCAGTCTTACACATAACACAGATAACAAGGACTAGAT
ACGCAACTGCAAATTCACCTCCGAAAAACTCACAACGGTTTCTTACAAGA
GGAGAAAGAAATTAAAATTAAAGGTTCCATGATGGACCGGAAACAAACAC
TTTATTCACAAAACCTCACAACATTATCTCATTATTCGCATCAACCATCC
ATCACAACCACCTAAATACAACTACTTTTTTGCCAGAGTTTATTTGCATG
CACACAGCTGATGAGTGATGATGCCTGTTATTACCAAATTAAGCATCAGC
AGTCTCAGCAGAATCAGCTGCAGCTAAGATCAGCTCAGGGTGAACGCCTC
CCACATATGTACCGTCTAATGCATTCGGCTGGCCCAGTGACTTCAACGCC
AAATGCGCAGCCTTCTGCCCCGATATCATCATTGCTCCAAATGTTGGCCC
CATTCGAGGAGCACCATCAATCTCGGCAACTTCCATGCCGGTAACTATCA
TACCAGGCACAACCTCCCTGGTCAGCCTCACAATAGCATCTTCTGCAGAG
TTCATGTCCAGTGCCTTCATTCCAGGCACTT
back to top