DN621007

Overview
NameDN621007
Unique NameDN621007
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621007 vs. ExPASy Swiss-Prot
Match: CCR4E_ARATH (Carbon catabolite repressor protein 4 homolog 5 OS=Arabidopsis thaliana GN=CCR4-5 PE=2 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 6.354e-40
Identity = 74/103 (71.84%), Postives = 88/103 (85.44%), Query Frame = -3
Query:  371 ELRLATGCEGVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTEELVPVRVLETLPVNILRRNGGLPSERWGSDHLALVCELAFANN 679
            EL+LATG +  T +QHQL L SAY G+PG++RTRD  GEPLAT+YHS+F+GTVDYIWHT+ELVPVRVLETLP ++LRR GGLPSE WGSDHLA+ CEL F N+
Sbjct:  350 ELQLATGGQETTHVQHQLKLNSAYSGVPGTYRTRDQRGEPLATTYHSRFLGTVDYIWHTKELVPVRVLETLPADVLRRTGGLPSENWGSDHLAIACELGFVND 452          
BLAST of DN621007 vs. ExPASy Swiss-Prot
Match: CCR4C_ARATH (Carbon catabolite repressor protein 4 homolog 3 OS=Arabidopsis thaliana GN=CCR4-3 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.723e-27
Identity = 57/104 (54.81%), Postives = 76/104 (73.08%), Query Frame = -3
Query:  368 ELRLATGCEGVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTEELVPVRVLETLPVNILRRNGGLPSERWGSDHLALVCELAFANNG 679
            E+R+ATG E      H L L S+Y  + GS  TRD++GEPLATSYHSKF+GTVDY+W+++ L+P RVL+TLP+++L +  GLP +  GSDHLALV E  F  +G
Sbjct:  345 EIRVATGQENSYWAAHPLKLNSSYASVKGSANTRDSVGEPLATSYHSKFLGTVDYLWYSDGLLPARVLDTLPIDVLCKTKGLPCQELGSDHLALVSEFVFEPDG 448          
BLAST of DN621007 vs. ExPASy Swiss-Prot
Match: CCR4F_ARATH (Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana GN=CCR4-6 PE=2 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 7.804e-22
Identity = 51/104 (49.04%), Postives = 66/104 (63.46%), Query Frame = -3
Query:  371 VELRLATGCEGVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTEELVPVRVLETLPVNILRRNGGLPSERWGSDHLALVCELAFANN 682
            +E+  ATG    T ++H L L S Y  + G   TRD  GEP+ TSYH  FMGTVDYIW +E L  VRVL  +P   ++   G P+ +WGSDH+ALV ELAF ++
Sbjct:  645 MEIATATGDPERTTVEHALELKSTYSEVEGQANTRDENGEPVVTSYHRCFMGTVDYIWRSEGLQTVRVLAPIPKQAMQWTPGFPTPKWGSDHIALVSELAFCSS 748          
The following BLAST results are available for this feature:
BLAST of DN621007 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CCR4E_ARATH6.354e-4071.84Carbon catabolite repressor protein 4 homolog 5 OS... [more]
CCR4C_ARATH4.723e-2754.81Carbon catabolite repressor protein 4 homolog 3 OS... [more]
CCR4F_ARATH7.804e-2249.04Carbon catabolite repressor protein 4 homolog 6 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06B22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006B22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621007 ID=DN621007; Name=DN621007; organism=Citrus sinensis; type=EST; length=687bp
TTTTTTTTTTTTTTTTTCTAACCAATTTTGTTAAGTCATTAAACGTTATG
AACAATTCAATGAGGAACGAAGCATCAAAATTTTACTTCTCCTAATTATA
TCTACTTGTACAATATATTACATTGGATACGACTTTCTAGAACTATGAAG
ATAAAAAGACTTTGATACTCAAATCTCCCAAGTGGATTGAAGCACAGTTT
ACCTTAAAATGCACTCCATAAACATTGCCTTTGTTACCTTACGGTAATGC
AACTTGCCAAAAGAAGCTGTTCCCCCATGCAGTTGGAACTCTTTACGGAA
CCAAAGCTTCTCACCATGTGAACATGCTGGTAAAGGATTTGAATTGGACC
TGTAATCAGGTACCATCACCATTGTTTGCAAAGGCCAGTTCACACACAAG
CGCAAGATGGTCACTGCCCCACCTCTCAGAAGGAAGTCCTCCATTTCTTC
TCAAAATGTTGACAGGCAAGGTTTCAAGAACTCTTACAGGAACAAGTTCC
TCTGTGTGCCAAATATAATCCACAGTTCCCATGAACTTGCTGTGATATGA
TGTCGCCAAGGGTTCTCCAAGATTGTCTCTCGTTCTGTGGCTACCAGGAA
TTCCAAAGTATGCACTGCAGAGGTTTAATTGGTGCTGAAGTTCAGTGACT
CCCTCGCAGCCAGTTGCAAGCCTTAATTCTACGTCAG
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