DN620998

Overview
NameDN620998
Unique NameDN620998
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620998 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.920e-28
Identity = 83/235 (35.32%), Postives = 115/235 (48.94%), Query Frame = 3
Query:   36 DGTITRE-PDVLPR-TPAKPDPNDNTIALSKDFTVNESKNIWVRIFLPHQALXXXXXXXXXXXAK---LPLIIHFHGGGFVFISAATSTNHEYCQLIAAQIPAVVVTAEYRLAPEHRLPAAYDDGMEVLHWLKTSQDGWLQQYADFS-SCFLTGDSAGGNLAYRVGLRASAIVDDLLPLTIKGLILIKPYFSGVKRTESELRLEKDPDFPLALNDTMWELALPLGADRDHEYCNP 722
            DGT  R   + L R  PA  +P +   +   D  ++   N+  R++ P  A                 +P+I+ FHGG F   SA ++     C+ +     AVVV+  YR APE+R P AYDDG  VL W+ +S   WL+   D     FL GDS+GGN+ + V +RA     D+L     G IL+ P F G +RTESE RL+      +   D  W   LP G DR+H  C+P
Sbjct:   38 DGTFNRHLAEFLDRKVPANANPVNGVFSF--DVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSS--SWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRIDVL-----GNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSP 263          
BLAST of DN620998 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.393e-28
Identity = 82/238 (34.45%), Postives = 117/238 (49.16%), Query Frame = 3
Query:   36 DGTITRE-PDVLPR-TPAKPDPNDNTIALSKDFTVNESKNIWVRIFLPHQALXXXXXXXXXXXAKL------PLIIHFHGGGFVFISAATSTNHEYCQLIAAQIPAVVVTAEYRLAPEHRLPAAYDDGMEVLHWLKTSQDGWLQQYADFS-SCFLTGDSAGGNLAYRVGLRASAIVDDLLPLTIKGLILIKPYFSGVKRTESELRLEKDPDFPLALNDTMWELALPLGADRDHEYCNP 722
            DG+  R+  + L R  PA   P D   +      V+ + N+  RI+ P   L             L      P++I FHGG F   SA ++    +C+ +      VVV+ +YR +PEHR P AYDDG   L+W+K+    WLQ   D +   +L GDS+GGN+A+ V +RA+        + + G IL+ P F G +RT+SE  L+      +   D  W   LP G DRDH  CNP
Sbjct:   38 DGSFNRDLAEFLDRKVPANSFPLDGVFSFDH---VDSTTNLLTRIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRV--WLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATN-----EGVKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNP 265          
BLAST of DN620998 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.605e-26
Identity = 69/166 (41.57%), Postives = 94/166 (56.63%), Query Frame = 3
Query:  228 PLIIHFHGGGFVFISAATSTNHEYCQLIAAQIPAVVVTAEYRLAPEHRLPAAYDDGMEVLHWLKTSQDGWLQQYADFSS-CFLTGDSAGGNLAYRVGLRASAIVDDLLPLTIKGLILIKPYFSGVKRTESELRLEKDPDFPLALNDTMWELALPLGADRDHEYCNP 722
            P+II FHGG FV  SA+++     C+        VVV+  YR APEHR P AYDDG   L W+ +    +++   D  +  FL+GDS+GGN+A+ V +RA+   D+   + + G IL+   F G +RTESE RL+      L   D  W+  LP  ADRDH  CNP
Sbjct:  114 PVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQP--FMRSGGDAQARVFLSGDSSGGNIAHHVAVRAA---DE--GVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNP 272          
BLAST of DN620998 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.026e-25
Identity = 85/251 (33.86%), Postives = 117/251 (46.61%), Query Frame = 3
Query:    6 MENFLVRINA----DGTITRE-PDVLPR-TPAKPDPNDNTIALSKDFTVNESKNIWVRIFLP-----HQALXXXXXXXXXXXAKLPLIIHFHGGGFVFISAATSTNHEYCQLIAAQIPAVVVTAEYRLAPEHRLPAAYDDGMEVLHWLKTSQDGWLQQYADFS-SCFLTGDSAGGNLAYRVGLRASAIVDDLLPLTIKGLILIKPYFSGVKRTESELRLEKDPDFPLALNDTMWELALPLGADRDHEYCNP 722
            + NF V  N     DGT  R   + L R   A  +P D   +   D  ++   N+  R++ P      Q               +P+I+ FHGG F   SA ++     C+ +      VVV+  YR APE+  P AYDDG   L+W+ +    WL+   D     FL GDS+GGN+A+ V LRA     D+L     G IL+ P F G +RTESE  L+      +   D  W+  LP G DR+H  CNP
Sbjct:   24 ISNFKVAYNILRRPDGTFNRHLAEYLDRKVTANANPVDGVFSF--DVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSR--SWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGIDVL-----GNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNP 265          
The following BLAST results are available for this feature:
BLAST of DN620998 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L3_ARATH4.920e-2835.32Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L2_ARATH8.393e-2834.45Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ4.605e-2641.57Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L1_ARATH1.026e-2533.86Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06B17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006B17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620998 ID=DN620998; Name=DN620998; organism=Citrus sinensis; type=EST; length=745bp
CAACAATGGAAAACTTCCTGGTGAGGATCAACGCCGATGGCACCATCACT
CGGGAACCCGATGTTTTGCCAAGAACACCAGCCAAACCCGATCCAAATGA
CAACACAATAGCCCTCTCAAAAGATTTCACCGTCAACGAATCAAAAAACA
TCTGGGTACGTATATTCCTGCCCCATCAAGCTCTTAATAATAATAATAAC
ACTTGTTCCTCATCATCCGCCAAGCTCCCTCTCATTATTCACTTCCACGG
CGGAGGCTTCGTTTTTATAAGCGCAGCTACATCCACGAACCATGAGTACT
GCCAATTGATCGCGGCCCAAATCCCTGCTGTGGTCGTGACAGCAGAGTAT
CGTCTTGCCCCTGAGCATCGTCTTCCCGCAGCCTACGATGATGGCATGGA
AGTGTTGCACTGGCTCAAGACAAGTCAAGACGGGTGGTTACAACAGTACG
CTGACTTTTCTTCCTGTTTCTTAACGGGAGATAGCGCTGGTGGTAACCTT
GCTTACCGGGTAGGATTACGTGCATCTGCTATAGTTGATGATTTGTTGCC
GCTGACAATCAAGGGCCTGATTTTGATCAAACCATACTTCAGTGGGGTCA
AGAGGACGGAATCAGAGTTGAGATTGGAGAAAGATCCTGATTTTCCGTTG
GCTCTTAATGATACGATGTGGGAGTTGGCACTGCCACTAGGTGCAGACCG
TGATCATGAGTATTGCAATCCCGACGTGGGAGGTGGATCAAAGCT
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