DN620997

Overview
NameDN620997
Unique NameDN620997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620997 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.129e-22
Identity = 71/180 (39.44%), Postives = 98/180 (54.44%), Query Frame = -1
Query:  227 AVVVTAEYRLAPEHRLPAAYDDGMEVLHWLKTSQDGWLQQYADFS-SCFLTGDSAGGNLAYRVGLRASAIVDDLLPLTIKGLILIKPYFSGVKRTESELRLEKDPDFPLALNDTMWELALPLGADRDHEYCNPTVGGGSKLIEKMSSLGWRVMEYVGFADPMSDRQIEFLKLLEQKGVAV 763
            AVVV+  YR APE+R P AYDDG  VL W+ +S   WL+   D     FL GDS+GGN+ + V +RA     D+L     G IL+ P F G +RTESE RL+      +   D  W   LP G DR+H  C+P  G  SK +E +S    + +  V   D + D Q+++ + L++ G  V
Sbjct:  138 AVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSS--WLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRIDVL-----GNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSP-FGPRSKSLEGLSFP--KSLVVVAGLDLIQDWQLKYAEGLKKAGQEV 307          
BLAST of DN620997 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.194e-21
Identity = 66/179 (36.87%), Postives = 96/179 (53.63%), Query Frame = -1
Query:  227 VVVTAEYRLAPEHRLPAAYDDGMEVLHWLKTSQDGWLQQYADFSS-CFLTGDSAGGNLAYRVGLRASAIVDDLLPLTIKGLILIKPYFSGVKRTESELRLEKDPDFPLALNDTMWELALPLGADRDHEYCNPTVGGGSKLIEKMSSLGWRVMEYVGFADPMSDRQIEFLKLLEQKGVAV 760
            VVV+ +YR +PEHR P AYDDG   L+W+K+    WLQ   D +   +L GDS+GGN+A+ V +RA+        + + G IL+ P F G +RT+SE  L+      +   D  W   LP G DRDH  CNP    G  L  K  +    ++   G  D + D Q+ ++  L++ G+ V
Sbjct:  141 VVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRV--WLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNE-----GVKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSL--KGVNFPKSLVVVAGL-DLVQDWQLAYVDGLKKTGLEV 309          
BLAST of DN620997 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.354e-20
Identity = 67/177 (37.85%), Postives = 94/177 (53.11%), Query Frame = -1
Query:  236 VVVTAEYRLAPEHRLPAAYDDGMEVLHWLKTSQDGWLQQYADFSS-CFLTGDSAGGNLAYRVGLRASAIVDDLLPLTIKGLILIKPYFSGVKRTESELRLEKDPDFPLALNDTMWELALPLGADRDHEYCNPTVGGGSKLIEKMSSLGW-RVMEYVGFADPMSDRQIEFLKLLEQKG 760
            VVV+  YR APEHR P AYDDG   L W+ +    +++   D  +  FL+GDS+GGN+A+ V +RA+   D+   + + G IL+   F G +RTESE RL+      L   D  W+  LP  ADRDH  CNP    G +L      L + + +  V   D   DRQ+ +   L + G
Sbjct:  148 VVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQP--FMRSGGDAQARVFLSGDSSGGNIAHHVAVRAA---DE--GVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRL----GGLPFAKSLIIVSGLDLTCDRQLAYADALREDG 313          
BLAST of DN620997 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.944e-20
Identity = 68/179 (37.99%), Postives = 94/179 (52.51%), Query Frame = -1
Query:  227 VVVTAEYRLAPEHRLPAAYDDGMEVLHWLKTSQDGWLQQYADFS-SCFLTGDSAGGNLAYRVGLRASAIVDDLLPLTIKGLILIKPYFSGVKRTESELRLEKDPDFPLALNDTMWELALPLGADRDHEYCNPTVGGGSKLIEKMSSLGWRVMEYVGFADPMSDRQIEFLKLLEQKGVAV 760
            VVV+  YR APE+  P AYDDG   L+W+ +    WL+   D     FL GDS+GGN+A+ V LRA     D+L     G IL+ P F G +RTESE  L+      +   D  W+  LP G DR+H  CNP    G K +E +S    + +  V   D + D Q+ + + L++ G  V
Sbjct:  141 VVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS--WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGIDVL-----GNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRG-KSLEGVSFP--KSLVVVAGLDLIRDWQLAYAEGLKKAGQEV 309          
The following BLAST results are available for this feature:
BLAST of DN620997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L3_ARATH1.129e-2239.44Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L2_ARATH6.194e-2136.87Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ2.354e-2037.85Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L1_ARATH8.944e-2037.99Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06B17_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006B17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620997 ID=DN620997; Name=DN620997; organism=Citrus sinensis; type=EST; length=772bp
TTTTTTTTTAAAAAAAAAAGATGGAATGCTTTTATTAGTTGCAATTATCA
TAAAAATCCAAAGCGAGAATCATAATTAAACATCAAATTCCTAATTACAC
TGACCCACCACCACTCACTAATTAAGCAGTCTTCGTGGAGGACAAAACAA
AGTCTTTAAAATAACCGCACAGAGCAGGACCAGCAAAGTCTCTACTACGG
TGGCCACTACCATCAACATGGCCCACCACAGCCACGCCCTTTTGTTCCAA
AAGCTTTAGAAACTCAATCTGACGGTCACTCATTGGGTCAGCAAAGCCAA
CGTACTCCATCACCCTCCATCCGAGCGAGCTCATTTTCTCAATCAGCTTT
GATCCACCTCCCACCGTCGGATTGCAATACTCATGATCACGGTCTGCACC
TAGTGGCAGTGCCAACTCCCACATCGTATCATTAAGAGCCAACGGAAAAT
CAGGATCTTTCTCCAATCTCAACTCTGATTCCGTCCTCTTGACCCCACTG
AAGTATGGTTTGATCAAAATCAGGCCCTTGATTGTCAGCGGCAACAAATC
ATCAACTATAGCAGATGCACGTAATCCTACCCGGTAAGCAAGGTTACCAC
CAGCGCTATCTCCCGTTAAGAAACAGGAAGAAAAGTCAGCGTACTGTTGT
AACCACCCGTCTTGACTTGTCTTGAGCCAGTGCAACACTTCCATGCCATC
ATCGTAGGCTGCGGGAAGACGATGCTCAGGGGCAAGACGATACTCTGCTG
TCACGACCACAGCAGGGATTTG
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