DN620994

Overview
NameDN620994
Unique NameDN620994
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length611
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620994 vs. ExPASy Swiss-Prot
Match: CALR1_ARATH (Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.407e-18
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = -1
Query:  480 VYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGKH 611
            V+P LKYVG+ELWQVKSG++FDNVLVSDDPEYAKKLAEETWGKH
Sbjct:  311 VFPKLKYVGVELWQVKSGSLFDNVLVSDDPEYAKKLAEETWGKH 354          
BLAST of DN620994 vs. ExPASy Swiss-Prot
Match: CALR_PRUAR (Calreticulin OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.669e-17
Identity = 37/43 (86.05%), Postives = 43/43 (100.00%), Query Frame = -1
Query:  483 VYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGK 611
            VYPNLKYVGIELWQVKSGT+FDN+L++D+PEYAK+LAEETWGK
Sbjct:  313 VYPNLKYVGIELWQVKSGTLFDNILITDEPEYAKQLAEETWGK 355          
BLAST of DN620994 vs. ExPASy Swiss-Prot
Match: CALR_RICCO (Calreticulin OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.098e-17
Identity = 38/44 (86.36%), Postives = 43/44 (97.73%), Query Frame = -1
Query:  480 VYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGKH 611
            VYPNLKYVGIELWQVKSGT+FDNVL+ +DPEYAK+LAEETWGK+
Sbjct:  309 VYPNLKYVGIELWQVKSGTLFDNVLICNDPEYAKQLAEETWGKN 352          
BLAST of DN620994 vs. ExPASy Swiss-Prot
Match: CALR_BERST (Calreticulin OS=Berberis stolonifera PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 7.964e-17
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = -1
Query:  480 VYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGKH 611
            V+P LKYVGIELWQVKSGTMFDNVL+ DDP+YAKKLAEETWGK+
Sbjct:  311 VFPKLKYVGIELWQVKSGTMFDNVLICDDPDYAKKLAEETWGKN 354          
BLAST of DN620994 vs. ExPASy Swiss-Prot
Match: CALR_BETVU (Calreticulin OS=Beta vulgaris PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.317e-16
Identity = 37/43 (86.05%), Postives = 41/43 (95.35%), Query Frame = -1
Query:  483 VYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGK 611
            VYP L+YVG+ELWQVKSGT+FDNVLV DDPEYAK+LAEETWGK
Sbjct:  314 VYPKLRYVGVELWQVKSGTLFDNVLVCDDPEYAKQLAEETWGK 356          
BLAST of DN620994 vs. ExPASy Swiss-Prot
Match: CALR2_ARATH (Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.562e-15
Identity = 34/43 (79.07%), Postives = 41/43 (95.35%), Query Frame = -1
Query:  483 VYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGK 611
            V+P LKYVG+ELWQVKSG++FDNVL+ DDP+YAKKLA+ETWGK
Sbjct:  311 VFPKLKYVGLELWQVKSGSLFDNVLICDDPDYAKKLADETWGK 353          
BLAST of DN620994 vs. ExPASy Swiss-Prot
Match: CALR_NICPL (Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.346e-15
Identity = 33/43 (76.74%), Postives = 40/43 (93.02%), Query Frame = -1
Query:  483 VYPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGK 611
            V+P LKYVG+ELWQVKSGT+FDN+++ DDPEYAK +AEETWGK
Sbjct:  316 VFPKLKYVGVELWQVKSGTLFDNIVICDDPEYAKAIAEETWGK 358          
BLAST of DN620994 vs. ExPASy Swiss-Prot
Match: CALR_ORYSJ (Calreticulin OS=Oryza sativa subsp. japonica GN=Os07g0246200 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 8.241e-14
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = -1
Query:  480 YPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGKH 608
            + +LKY+GIELWQVKSGT+FDN L++DDPE AK  AEETWGKH
Sbjct:  319 FDSLKYIGIELWQVKSGTLFDNFLITDDPELAKTFAEETWGKH 361          
BLAST of DN620994 vs. ExPASy Swiss-Prot
Match: CALR_MAIZE (Calreticulin OS=Zea mays GN=CRT PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.398e-13
Identity = 30/43 (69.77%), Postives = 38/43 (88.37%), Query Frame = -1
Query:  480 YPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGKH 608
            + +LKY+GIELWQVKSGT+FDN++++DDP  AK  AEETWGKH
Sbjct:  315 FDSLKYIGIELWQVKSGTLFDNIIITDDPALAKTFAEETWGKH 357          
BLAST of DN620994 vs. ExPASy Swiss-Prot
Match: CALR_CHLRE (Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.522e-12
Identity = 30/43 (69.77%), Postives = 38/43 (88.37%), Query Frame = -1
Query:  480 YPNLKYVGIELWQVKSGTMFDNVLVSDDPEYAKKLAEETWGKH 608
            + +LK+VG ELWQVKSG++FDN+LV+DD E AKK AE+TWGKH
Sbjct:  312 FKDLKFVGFELWQVKSGSIFDNILVTDDLEAAKKFAEDTWGKH 354          
The following BLAST results are available for this feature:
BLAST of DN620994 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CALR1_ARATH9.407e-1888.64Calreticulin-1 OS=Arabidopsis thaliana GN=CRT1 PE=... [more]
CALR_PRUAR4.669e-1786.05Calreticulin OS=Prunus armeniaca PE=2 SV=1[more]
CALR_RICCO6.098e-1786.36Calreticulin OS=Ricinus communis PE=2 SV=1[more]
CALR_BERST7.964e-1786.36Calreticulin OS=Berberis stolonifera PE=2 SV=1[more]
CALR_BETVU2.317e-1686.05Calreticulin OS=Beta vulgaris PE=2 SV=1[more]
CALR2_ARATH2.562e-1579.07Calreticulin-2 OS=Arabidopsis thaliana GN=CRT2 PE=... [more]
CALR_NICPL3.346e-1576.74Calreticulin OS=Nicotiana plumbaginifolia GN=CAL1 ... [more]
CALR_ORYSJ8.241e-1474.42Calreticulin OS=Oryza sativa subsp. japonica GN=Os... [more]
CALR_MAIZE2.398e-1369.77Calreticulin OS=Zea mays GN=CRT PE=2 SV=1[more]
CALR_CHLRE4.522e-1269.77Calreticulin OS=Chlamydomonas reinhardtii PE=2 SV=... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06B15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006B15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620994 ID=DN620994; Name=DN620994; organism=Citrus sinensis; type=EST; length=611bp
TTTTTTTTTTTTGGGCGCATAAAGCTCCAGTGTCCAAAGTATATTCATAA
ATGTGTCCATAAAAGCCCACAATATTTCAATCCTCTTTGTTCTAAAAGCT
CAGATAGTTAAAATGAGATTTAAGCAATGATCGGCCACACAAATTTTACA
TGCAGCCTTTCTTTCTACTCTTCAGGTCACTTTCCTAAAGAATAAACGTC
CCTAGAGCTGAAAATCAAAATAGAAAACAGAAAAATTTTGGAGCATCTTT
ACGCCCAAATTCTCGGGGCTTATCATAGCATTTTCCCCTACAGCTCATCA
TGTACATCCTTGTCTGCGTCTCCGCTGCTGGAGTCTGATTTGGTTTCAGC
ATCAGCATCATCATCATCTTCAGTGTCATCGTCATCATTATCCTCAGCAT
CAGAATCAGGTGCGTCCTTTGATTCCTCCTCCTCTCTCTTCTTCTCAGCC
TCATCAAATGCTGCCTTCTCGGCATCCTTATGCTTTCCCCATGTTTCTTC
GGCCAACTTCTTGGCATACTCTGGATCATCACTAACCAAGACATTGTCAA
ACATGGTTCCAGATTTCACCTGCCACAACTCAATGCCAACATACTTCAAG
TTGGGATACAC
back to top