DN620990

Overview
NameDN620990
Unique NameDN620990
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620990 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.053e-47
Identity = 107/187 (57.22%), Postives = 127/187 (67.91%), Query Frame = 2
Query:   68 LVSREARTSIARRNVAPCSVTLPATS---RKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQG-----TQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAG-----GXSFSSYDT 589
            +VS  +RT+  +   AP SV  P +    RK A RL A   QA G+NKDTSVDVHV++ NQG     + VERRPRR ALD+SPFGL+DP  P RTMRQM+DTMDRL EDTM FPG SR  G G++R PWDIK++ENEIKMRFDMPGL             LVIKGEH+ EE+G     G ++SSYDT
Sbjct:   18 VVSATSRTNNKKTTTAPFSVCFPYSKCSVRKPASRLVA---QATGDNKDTSVDVHVSNNNQGGNNQGSAVERRPRRMALDVSPFGLLDPMSPMRTMRQMMDTMDRLFEDTMTFPG-SRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDSWGRNYSSYDT 200          
BLAST of DN620990 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.345e-47
Identity = 106/189 (56.08%), Postives = 127/189 (67.20%), Query Frame = 2
Query:   65 PLVSREARTSIARRN----VAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSG----NQGTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAG------GXSFSSYDT 589
            PLVS  +    ++ N     APCSV +P+  R+   RL A   +A G+NKDTSVDVH +S     NQGT VERRP R ALD+SPFG++DP  P RTMRQM+DTMDRL EDTM FPGR+RA G G++RTPWDI ++ENEIKMRFDMPGL             LVIKGEH+ EE G      G ++SSYDT
Sbjct:   10 PLVSNVSVGGTSKINNNKVSAPCSVFVPSM-RRPTTRLVA---RATGDNKDTSVDVHHSSAQGGNNQGTAVERRPTRMALDVSPFGVLDPMSPMRTMRQMIDTMDRLFEDTMTFPGRNRASGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSWGRNYSSYDT 194          
BLAST of DN620990 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.511e-41
Identity = 90/183 (49.18%), Postives = 122/183 (66.67%), Query Frame = 2
Query:   65 PLVSREARTSIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGE--NKDTSVDVH-VNSGNQGTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAG-----GXSFSSYDT 589
            P++S++  +S+  ++  PC  + P   +     L+ VRAQAGG+  NKD SV+VH VN  +QGT VER+PRR+++DISPFGL+DP  P R+MRQMLDTMDR+ ED +  PGR+   GGG++R PW+IK+EE+EI+MRFDMPG+             LVIK +HR E  G       S+S YDT
Sbjct:   13 PILSQKPGSSV--KSTPPCMASFPLRRQLPRLGLRNVRAQAGGDGDNKDNSVEVHRVNKDDQGTAVERKPRRSSIDISPFGLLDPWSPMRSMRQMLDTMDRIFEDAITIPGRNI--GGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGGEDCWSRKSYSCYDT 191          
BLAST of DN620990 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.185e-40
Identity = 82/142 (57.75%), Postives = 105/142 (73.94%), Query Frame = 2
Query:  188 GGENKDTSVDV-HVNSGNQGTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGG-------XSFSSYDT 589
            GG+NKD SV+V HV+ G+QGT VE++PRRTA+DISPFG++DP  P R+MRQ+LDTMDR+ EDTM FPGR+   GGG++R PWDIK+EE+EI+MRFDMPGL             LVIKG H++E+  G        ++SSYDT
Sbjct:    1 GGDNKDNSVEVQHVSKGDQGTAVEKKPRRTAMDISPFGILDPWSPMRSMRQILDTMDRVFEDTMTFPGRNI--GGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDSWSSRTYSSYDT 140          
BLAST of DN620990 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.587e-35
Identity = 86/172 (50.00%), Postives = 106/172 (61.63%), Query Frame = 2
Query:   92 SIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHVNSGNQGTQVERRPR-RTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGG-GQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEA----GGXSFSSYDT 589
            S++ ++  P SV+ P   RK   R   +RAQ   EN    V      GNQG+ VE+RP+ R  +D+SPFGL+DP  P RTMRQMLDTMDR+ EDTM   GR+R G G  ++R PWDIKEEE+EIKMRFDMPGL             LVIKGE + E++     G S SSY T
Sbjct:   21 SVSSKSATPFSVSFP---RKIPSR---IRAQDQRENSIDVVQQGQQKGNQGSSVEKRPQQRLTMDVSPFGLLDPLSPMRTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGT 186          
BLAST of DN620990 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 9.565e-33
Identity = 87/189 (46.03%), Postives = 100/189 (52.91%), Query Frame = 2
Query:   68 LVSREARTSIARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKDTSVDVHV----NSGNQ-GTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGG-----------XSFSSYD 586
            LVSR   +  AR  +       PA    G        A A  EN+D SVDV V    N+GNQ G  V+RRPRR   DISPFGL+DP  P RTMRQMLDTMDRL +D + FP R       + R PWDI E+E E+KMRFDMPGL             LVI+GEH+ E   G            S SSYD
Sbjct:   10 LVSR--LSPAARLPIRAWRAARPAPLSTGGRTRPLSVASAAQENRDNSVDVQVSQAQNAGNQQGNAVQRRPRRAGFDISPFGLVDPMSPMRTMRQMLDTMDRLFDDAVGFPTRRSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGGDGWWKERSVSSYD 196          
BLAST of DN620990 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.605e-30
Identity = 93/193 (48.19%), Postives = 112/193 (58.03%), Query Frame = 2
Query:   71 VSREARTSI--ARRNVAPCSVTLPATSRKGAYRLQAVRAQAGGENKD-TSVDVHVNS--GNQ-GTQVERRPRRT-ALD-ISPFGLMDPSFPTRTMRQMLDTMDRLLEDT-MAFPGRSRAG-GGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXXLVIKGEHRAEEAGG-----------XSFSSYD 586
            VS  AR  I  A R   P +V LP++ R      Q   A A  EN+D T+VDVHVN   GNQ G  V+RRPRR+ ALD ISPFGL+DP  P RTMRQMLDTMDR+ +D  + FP   R     G+VR PWD+ E++ E++MRFDMPGL             LVI+GEH+ EE  G            S SSYD
Sbjct:   11 VSPAARLPIRAAWRRARP-TVGLPSSGRAR----QLAVASAAQENRDNTAVDVHVNQDGGNQQGNAVQRRPRRSSALDGISPFGLVDPMSPMRTMRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYD 198          
The following BLAST results are available for this feature:
BLAST of DN620990 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
HS22C_PETHY1.053e-4757.22Small heat shock protein, chloroplastic OS=Petunia... [more]
HS21C_SOLLC2.345e-4756.08Small heat shock protein, chloroplastic OS=Solanum... [more]
HS21C_PEA2.511e-4149.18Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS22C_SOYBN6.185e-4057.75Small heat shock protein, chloroplastic (Fragment)... [more]
HS25P_ARATH4.587e-3550.0025.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS21C_WHEAT9.565e-3346.03Small heat shock protein, chloroplastic OS=Triticu... [more]
HS26P_ORYSJ2.605e-3048.1926.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06B13_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006B13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620990 ID=DN620990; Name=DN620990; organism=Citrus sinensis; type=EST; length=591bp
CTCAAGTGCTCAGAAAACAAAGTGAAAATAAATGGCTGCAACATTATCTA
TCTCATCATCATCACCCTTGGTATCGCGCGAGGCCAGGACCTCAATAGCT
AGGAGAAATGTGGCGCCATGCTCGGTAACCTTACCGGCAACGTCAAGGAA
AGGCGCCTATCGGCTACAAGCCGTGAGAGCTCAGGCTGGTGGGGAGAACA
AGGATACTTCGGTTGACGTCCATGTTAATTCCGGTAACCAAGGAACCCAA
GTGGAGAGGAGGCCTCGAAGAACGGCTCTCGATATTTCACCTTTCGGTTT
GATGGATCCCTCGTTTCCAACGAGGACAATGCGGCAGATGCTGGACACAA
TGGACCGTCTATTAGAGGATACGATGGCTTTTCCGGGGAGGAGCCGGGCT
GGCGGGGGAGGCCAGGTGAGAACACCGTGGGACATCAAAGAGGAGGAAAA
TGAGATCAAAATGAGATTTGACATGCCTGGACTCTCTAAGGAGGATGTCA
AAGTGTCGGTGGAAGATGAAGTCCTTGTCATTAAAGGAGAGCACAGGGCA
GAAGAAGCTGGAGGTGNCAGTTTTAGCTCTTACGATACTCG
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