DN620989

Overview
NameDN620989
Unique NameDN620989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620989 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 243.817 bits (621), Expect = 7.486e-64
Identity = 124/186 (66.67%), Postives = 144/186 (77.42%), Query Frame = -1
Query:  227 QAGGENKDTSVDVHVNSG----NQGTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAG------GASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 754
            +A G+NKDTSVDVH +S     NQGT VERRP R ALD+SPFG++DP  P RTMRQM+DTMDRL EDTM FPGR+RA G G++RTPWDI ++ENEIKMRFDMPGL            +LVIKGEH+ EE G      G ++SSYDTRL LPDN  KDK+KAELKNGVL+ISIPKT+VE+KVIDVQI
Sbjct:   49 RATGDNKDTSVDVHHSSAQGGNNQGTAVERRPTRMALDVSPFGVLDPMSPMRTMRQMIDTMDRLFEDTMTFPGRNRASGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSWGRNYSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPKTEVEKKVIDVQI 234          
BLAST of DN620989 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.337e-63
Identity = 126/186 (67.74%), Postives = 144/186 (77.42%), Query Frame = -1
Query:  227 QAGGENKDTSVDVHVNSGNQG-----TQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAG-----GASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 754
            QA G+NKDTSVDVHV++ NQG     + VERRPRR ALD+SPFGL+DP  P RTMRQM+DTMDRL EDTM FPG SR  G G++R PWDIK++ENEIKMRFDMPGL            VLVIKGEH+ EE+G     G ++SSYDTRL LPDN +KDKVKAELKNGVL ISIPKTKVE+KV DV+I
Sbjct:   56 QATGDNKDTSVDVHVSNNNQGGNNQGSAVERRPRRMALDVSPFGLLDPMSPMRTMRQMMDTMDRLFEDTMTFPG-SRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDSWGRNYSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPKTKVEKKVTDVEI 240          
BLAST of DN620989 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 3.145e-62
Identity = 119/182 (65.38%), Postives = 146/182 (80.22%), Query Frame = -1
Query:  227 GGENKDTSVDV-HVNSGNQGTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGA-------SFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 748
            GG+NKD SV+V HV+ G+QGT VE++PRRTA+DISPFG++DP  P R+MRQ+LDTMDR+ EDTM FPGR+   GGG++R PWDIK+EE+EI+MRFDMPGL            +LVIKG H++E+  G        ++SSYDTRL+LPDNCEKDKVKAELKNGVLYI+IPKTKVERKVIDVQ+
Sbjct:    1 GGDNKDNSVEVQHVSKGDQGTAVEKKPRRTAMDISPFGILDPWSPMRSMRQILDTMDRVFEDTMTFPGRNI--GGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDSWSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPKTKVERKVIDVQV 180          
BLAST of DN620989 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 3.046e-57
Identity = 115/184 (62.50%), Postives = 141/184 (76.63%), Query Frame = -1
Query:  227 QAGGE--NKDTSVDVH-VNSGNQGTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAG-----GASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 754
            QAGG+  NKD SV+VH VN  +QGT VER+PRR+++DISPFGL+DP  P R+MRQMLDTMDR+ ED +  PGR+   GGG++R PW+IK+EE+EI+MRFDMPG+            VLVIK +HR E  G       S+S YDTRL+LPDNCEK+KVKAELK+GVLYI+IPKTK+ER VIDVQI
Sbjct:   50 QAGGDGDNKDNSVEVHRVNKDDQGTAVERKPRRSSIDISPFGLLDPWSPMRSMRQMLDTMDRIFEDAITIPGRNI--GGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGGEDCWSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPKTKIERTVIDVQI 231          
BLAST of DN620989 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.352e-55
Identity = 113/181 (62.43%), Postives = 134/181 (74.03%), Query Frame = -1
Query:  227 ENKDTSVDV---HVNSGNQGTQVERRPR-RTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGG-GQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEA----GGASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 742
            + ++ S+DV       GNQG+ VE+RP+ R  +D+SPFGL+DP  P RTMRQMLDTMDR+ EDTM   GR+R G G  ++R PWDIKEEE+EIKMRFDMPGL            VLVIKGE + E++     G S SSY TRLQLPDNCEKDK+KAELKNGVL+I+IPKTKVERKVIDVQI
Sbjct:   46 DQRENSIDVVQQGQQKGNQGSSVEKRPQQRLTMDVSPFGLLDPLSPMRTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTKVERKVIDVQI 226          
BLAST of DN620989 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.802e-49
Identity = 104/191 (54.45%), Postives = 122/191 (63.87%), Query Frame = -1
Query:  227 AGGENKDTSVDVHV----NSGNQ-GTQVERRPRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGG-----------ASFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 751
            A  EN+D SVDV V    N+GNQ G  V+RRPRR   DISPFGL+DP  P RTMRQMLDTMDRL +D + FP R       + R PWDI E+E E+KMRFDMPGL             LVI+GEH+ E   G            S SSYD RL LPD C+K +V+AELKNGVL +S+PK + ERKVIDVQ+
Sbjct:   47 AAQENRDNSVDVQVSQAQNAGNQQGNAVQRRPRRAGFDISPFGLVDPMSPMRTMRQMLDTMDRLFDDAVGFPTRRSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGGDGWWKERSVSSYDMRLALPDECDKSQVRAELKNGVLLVSVPKRETERKVIDVQV 237          
BLAST of DN620989 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.823e-48
Identity = 109/194 (56.19%), Postives = 132/194 (68.04%), Query Frame = -1
Query:  227 AGGENKD-TSVDVHVNS--GNQ-GTQVERRPRRT-ALD-ISPFGLMDPSFPTRTMRQMLDTMDRLLEDT-MAFPGRSRAG-GGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGA-----------SFSSYDTRLQLPDNCEKDKVKAELKNGVLYISIPKTKVERKVIDVQI 751
            A  EN+D T+VDVHVN   GNQ G  V+RRPRR+ ALD ISPFGL+DP  P RTMRQMLDTMDR+ +D  + FP   R     G+VR PWD+ E++ E++MRFDMPGL             LVI+GEH+ EE  GA           S SSYD RL LPD C+K KV+AELKNGVL +++PKT+VERKVIDVQ+
Sbjct:   46 AAQENRDNTAVDVHVNQDGGNQQGNAVQRRPRRSSALDGISPFGLVDPMSPMRTMRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVPKTEVERKVIDVQV 239          
BLAST of DN620989 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.210e-18
Identity = 59/157 (37.58%), Postives = 86/157 (54.78%), Query Frame = -1
Query:  245 GTQVERR--PRRTALDISPFGLMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGASFSS----YDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTKVERK 694
            G  + RR  PRR     S   + DP  PTR++ Q+L+ MD+ +E+ +     +R  G    R  WDIKE+++ + +R DMPGL             LVI+GE + EE GG    S    + +R+ LPD   K D++KAE+KNGVL + IPK K + +
Sbjct:   49 GVDLYRRSVPRRRGDFFSD--VFDPFSPTRSVSQVLNLMDQFMENPLL--SATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGNRRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPKMKEQER 201          
BLAST of DN620989 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.171e-16
Identity = 49/134 (36.57%), Postives = 77/134 (57.46%), Query Frame = -1
Query:  245 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGASFSS--YDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTKVERK 637
            ++DP  PTR++ QML+ MD++ E  +     +R  G   VR  W++KE+++ + +R DMPGL             LVI+GE   EE    S     + +R++LP+   K D++KAE+KNGVL + IPK K + +
Sbjct:   70 ILDPFTPTRSLSQMLNFMDQVSEIPLV--SATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGEGETEEGEDVSGDGRRFTSRIELPEKVYKTDEIKAEMKNGVLKVVIPKIKEDER 201          
BLAST of DN620989 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.591e-16
Identity = 47/139 (33.81%), Postives = 75/139 (53.96%), Query Frame = -1
Query:  224 LMDPSFPTRTMRQMLDTMDRLLEDTMAFPGRSRAGGGGQVRTPWDIKEEENEIKMRFDMPGLXXXXXXXXXXXXVLVIKGEHRAEEAGGASFSSYDTRLQLPDNCEK-DKVKAELKNGVLYISIPKTKVERKVIDVQIL 637
            + DP   TR++ Q+++ MD+L+E+      R   G G  +R  WD++E+E  ++++ DMPGL             L+IK E   E         Y +R++L  N  K D +KAE+KNGVL +++PK K E K    Q++
Sbjct:   67 VFDPFRATRSVGQLMNLMDQLMENPFMAASR---GSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIKSEAEKETEEEEQRRRYSSRIELTPNLYKIDGIKAEMKNGVLKVTVPKIKEEEKKDVFQVM 202          
The following BLAST results are available for this feature:
BLAST of DN620989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
HS21C_SOLLC7.486e-6466.67Small heat shock protein, chloroplastic OS=Solanum... [more]
HS22C_PETHY6.337e-6367.74Small heat shock protein, chloroplastic OS=Petunia... [more]
HS22C_SOYBN3.145e-6265.38Small heat shock protein, chloroplastic (Fragment)... [more]
HS21C_PEA3.046e-5762.50Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS25P_ARATH6.352e-5562.4325.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS21C_WHEAT6.802e-4954.45Small heat shock protein, chloroplastic OS=Triticu... [more]
HS26P_ORYSJ9.823e-4856.1926.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS23M_ARATH6.210e-1837.5823.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS235_ARATH1.171e-1636.5723.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS23C_CHERU7.591e-1633.81Small heat shock protein, chloroplastic OS=Chenopo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06B13_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006B13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620989 ID=DN620989; Name=DN620989; organism=Citrus sinensis; type=EST; length=754bp
CTTTTCCAAACCTTAAATACACATTGCGCTAGGCACACATCATTATAATT
ACAGGATCTGAACATCAATGACCTTGCGCTCCACATGGGTCTTAGGAATT
GAAATGTAAAGAACACCATTCTTCAGCTCTGCATCTCAATTTATTTATAC
ACTTACAAAGCTGGACATGTAGATCACAAAACCTCAACATACACATTTCG
CTAGGCACTCATTATTATAATTACAGAATCTGAACATCAATGACCTTGCG
CTCCACCTTTGTCTTAGGAATTGAAATGTAAAGAACACCATTCTTGAGCT
CTGCCTTGACCTTATCTTTCTCACAGTTATCAGGAAGCTGGAGACGAGTA
TCGTAAGAGCTAAAACTTGCACCTCCAGCTTCTTCTGCCCTGTGCTCTCC
TTTAATGACAAGGACTTCATCTTCCACCGACACTTTGACATCCTCCTTAG
AGAGTCCAGGCATGTCAAATCTCATTTTGATCTCATTTTCCTCCTCTTTG
ATGTCCCACGGTGTTCTCACCTGGCCTCCCCCGCCAGCCCGGCTCCTCCC
CGGAAAAGCCATCGTATCCTCTAATAGACGGTCCATTGTGTCCAGCATCT
GCCGCATTGTCCTCGTTGGAAACGAGGGATCCATCAAACCGAAAGGTGAA
ATATCGAGAGCCGTTCTTCGAGGCCTCCTCTCCACTTGGGTTCCTTGGTT
ACCGGAATTAACATGGACGTCAACCGAAGTATCCTTGTTCTCCCCACCAG
CCTG
back to top