DN620986

Overview
NameDN620986
Unique NameDN620986
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620986 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 6.892e-44
Identity = 83/109 (76.15%), Postives = 93/109 (85.32%), Query Frame = -1
Query:  192 IGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 518
            +GV  IGK LVNS+E  P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AALG+ANADAI  G FYGK AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct:  364 LGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          
BLAST of DN620986 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 7.619e-43
Identity = 78/111 (70.27%), Postives = 96/111 (86.49%), Query Frame = -1
Query:  186 IGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 518
            +GV ++GK LVNSK+  P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AALG+AN DAI  G F+GKAAQQ+++PV +GCTDP A+N+DPTARSDDGSC Y L
Sbjct:  362 VGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472          
BLAST of DN620986 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 2.895e-42
Identity = 81/110 (73.64%), Postives = 99/110 (90.00%), Query Frame = -1
Query:  189 GVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYT 515
            GV +IGK LVNS+E  P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAALG+AN+DA+++G+FYG+ AQQ  N+PVPEGCTDP A+NFDPTARSDDGSC YT
Sbjct:  356 GVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYT 465          
BLAST of DN620986 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 6.450e-42
Identity = 84/111 (75.68%), Postives = 97/111 (87.39%), Query Frame = -1
Query:  192 IGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY-GKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQY 518
            +GV +IGK LVNSKE  P+FEQP+MT++KLL YG M+VQEQENVKRVQLADKY+SEAALG+AN DAI+ G FY G+AAQQ+ NVPVPEGCTDP A N+DPTARSDDGSC Y
Sbjct:  364 VGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474          
BLAST of DN620986 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.201e-41
Identity = 77/109 (70.64%), Postives = 96/109 (88.07%), Query Frame = -1
Query:  189 GVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYT 515
            G+ +IGK LVNS++   TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN DA+++G+FYGK AQQ  +PVPEGCTD  A+N+DPTARSDDGSC YT
Sbjct:  355 GIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYT 463          
BLAST of DN620986 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.068e-28
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = -1
Query:  297 IGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 518
            +GV SIGK LVNSKE  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+AN+DA+ +G FYG
Sbjct:  364 VGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of DN620986 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.799e-26
Identity = 56/75 (74.67%), Postives = 68/75 (90.67%), Query Frame = -1
Query:  294 IGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGK 518
            IGV +I K LVNS+E  PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAALG+AN DA+++G FYGK
Sbjct:  351 IGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425          
BLAST of DN620986 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.444e-25
Identity = 54/72 (75.00%), Postives = 65/72 (90.28%), Query Frame = -1
Query:  303 IGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNF 518
            +GV +IGK LVNSKE  PTFEQP+MT++KLL+YGNM+V+EQENVKRVQLADKY+SEAALG+AN DAI+ G F
Sbjct:  364 VGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435          
BLAST of DN620986 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 2.462e-25
Identity = 53/73 (72.60%), Postives = 66/73 (90.41%), Query Frame = -1
Query:  300 IGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 518
            +GV + GK LVNSKE  PTF+QP+M+++KLL+YGNM+VQEQENVKRVQLADKYL+EAALG AN DAI+SG+F+
Sbjct:  366 VGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          
BLAST of DN620986 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.596e-24
Identity = 53/72 (73.61%), Postives = 63/72 (87.50%), Query Frame = -1
Query:  300 GVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 515
            G+  IG  L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAALG+ANADAI +G+F+
Sbjct:  369 GIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440          
The following BLAST results are available for this feature:
BLAST of DN620986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RCA_ARATH6.892e-4476.15Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL7.619e-4370.27Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ2.895e-4273.64Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR6.450e-4275.68Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU3.201e-4170.64Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO1.068e-2881.08Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU3.799e-2674.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR1.444e-2575.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU2.462e-2572.60Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC1.596e-2473.61Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06B11_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620986 ID=DN620986; Name=DN620986; organism=Citrus sinensis; type=EST; length=518bp
TTTTTTTTTTTTTTTTTAATGGTAAGAAGGAGCACCTTTTAAAGATCGAA
TAAAGAGTTGTGATATAACACAAAATTAGAGGATTCTTTCTAATTAACAA
AGAAATGAAAATGCAACAATATTATTTGAATATCTCACATCCTAAGCAAA
GTGCGACACTTCTCAACCCTTAGAAACAAGGCCTAAAGCGTGTATTGGCA
GCTTCCATCATCACTTCTTGCAGTTGGATCAAAGTTTTCTGCAGTAGGAT
CAGTACATCCTTCAGGAACTGGAACATTCATTTGCTGGGCTGCTTTGCCA
TAGAAATTTCCACTCTGAATAGCATCTGCATTAGCTTCACCAAGAGCGGC
CTCACTCAAATACTTGTCAGCCAACTGAACTCTCTTCACATTCTCTTGCT
CTTGCACAATCATGTTTCCGTACTCGAGCAGCTTCTCCATTGTCATCCTT
GGTTGCTCGAATGTTGGGGCTGCTTCCTTTGAGTTCACAAGGCTCTTGCC
AATGCTTCCAACACCAAT
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