DN620974

Overview
NameDN620974
Unique NameDN620974
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN620974 vs. ExPASy Swiss-Prot
Match: PP397_ARATH (Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.501e-30
Identity = 70/136 (51.47%), Postives = 88/136 (64.71%), Query Frame = 2 
Query:  284 EKKQLYSNSKPTDSQP-------QTHCSFCMNKESCRTVRSMTKLMNILIERGKPQEAQAIFNNLIEGGHKPSXXXXXXXXXXXXIQKRFNSIHSIMSQVEENGMEPDSIFFNAVINAFSESGNMEEAMDTFWKMK 670
            EKK++   S+P  S P          C  C+   SCRTVRS TKLMN+LIERG+P EAQ +F  L E GH+PS            +QK++ SI SI+S+VE++G + DSIFFNAVINAFSESGNME+A+    KMK
Sbjct:    7 EKKKVPPMSEPERSTPIKTTGGQYRFCKSCVEGSSCRTVRSRTKLMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQSGTKLDSIFFNAVINAFSESGNMEDAVQALLKMK 142
[Close]
BLAST of DN620974 vs. ExPASy Swiss-Prot
Match: PP395_ARATH (Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana GN=ATC401 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.649e-27
Identity = 65/136 (47.79%), Postives = 90/136 (66.18%), Query Frame = 2 
Query:  266 KKNNPGEKKQLYSNSKPTDSQPQTH-CSFCMNKESCRTVRSMTKLMNILIERGKPQEAQAIFNNLIEGGHKPSXXXXXXXXXXXXIQKRFNSIHSIMSQVEENGMEPDSIFFNAVINAFSESGNMEEAMDTFWKMK 670
            K+ N  + + ++ +S+    Q ++  C  C    +C  VRS TKLMN LIERG+PQEA +IFN LIE GHKPS             QK F+S+ S++S+VE+NG++PD+I FNA+INA SESGN+++AM  F KMK
Sbjct:  281 KEANLADVEAVFKDSEEGRVQLRSFPCVICSGGTTCGDVRSRTKLMNGLIERGRPQEAHSIFNTLIEEGHKPSLITYTTLVTALTRQKHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMK 416
The following BLAST results are available for this feature:
BLAST of DN620974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PP397_ARATH1.501e-3051.47Pentatricopeptide repeat-containing protein At5g25... [more]
PP395_ARATH2.649e-2747.79Pentatricopeptide repeat-containing protein At5g21... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06B05_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620974 ID=DN620974; Name=DN620974; organism=Citrus sinensis; type=EST; length=671bp
CAGAAATTCAAACTCCATCCCCCCCTCACTGTAGCCAAGAGGATTTTTTT
ATGAGGGAATGTGGTGGTGGATAAAGTTTCAAGTTCTGGCCTTTGCATGA
AATTTGTTCAGAGATCAGATTGCTTGAGATTTTCAGCTTGACGAGGACAA
ACTGAGAGGATCTATGGGGAAATTTGCTAAAGGGAAGGCTTTTTTGCAAA
CTGATGACAAATATCAATCTGGAAGTACCATTGTGAAGAAAGGATGGGGG
CAAATGATACCAGCTAAGAAGAATAATCCTGGTGAAAAGAAACAGTTATA
TTCAAATTCAAAGCCCACAGACTCCCAACCACAAACCCACTGCTCTTTCT
GCATGAACAAGGAAAGTTGCCGAACTGTACGCTCAATGACAAAACTAATG
AACATTTTGATAGAAAGAGGAAAGCCCCAGGAAGCCCAGGCCATTTTTAA
CAACTTGATTGAAGGGGGACACAAACCATCTTTAGTAACCTACACAACCC
TCTTGGCCGCCTTGACCATCCAGAAGCGCTTCAACTCCATACATTCTATT
ATGTCACAGGTGGAAGAAAATGGTATGGAACCTGACTCGATATTTTTTAA
TGCTGTGATAAACGCCTTCTCTGAATCTGGTAACATGGAAGAAGCAATGG
ACACCTTCTGGAAAATGAAGG
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