DN620973

Overview
NameDN620973
Unique NameDN620973
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length716
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN620973 vs. ExPASy Swiss-Prot
Match: PP397_ARATH (Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana GN=At5g25630 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.077e-29
Identity = 75/175 (42.86%), Postives = 100/175 (57.14%), Query Frame = -2 
Query:  191 KTFETLMWGYSEARQPWRAEEILQIMKAFGVHPQKSTFLLLAEARRATGLTKEAKRILSKIKNKERTNEMEAEEDIPVESLERLYHKEATTASYPNLLQIPNVVSSDQKGSAAALKKGRMLLRDADSSLECSWFATTSMYLSHSCKSGARLPIICQKQPLGQVGMYSQLANSCTV 715
            KTFETLMWGY E +QPW+AEE+LQ+M+  GV P+ STFLLLAEA R  GLT E+ + ++ +K K          DI +  LE+LY K+++ +S+ NLLQIP  V   +  +A A+                            +CK GAR+PIICQKQ   Q G+  Q  +SCTV
Sbjct:  435 KTFETLMWGYLEVKQPWKAEEVLQMMRGCGVKPENSTFLLLAEAWRVAGLTDESNKAINALKCK----------DIEIAKLEKLYQKQSSGSSF-NLLQIP--VGKRELPTAKAMNLS-------------------------ACKLGARVPIICQKQSQAQFGISGQFVHSCTV 571
The following BLAST results are available for this feature:
BLAST of DN620973 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP397_ARATH7.077e-2942.86Pentatricopeptide repeat-containing protein At5g25... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06B05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620973 ID=DN620973; Name=DN620973; organism=Citrus sinensis; type=EST; length=716bp
TTTTTTTTTTTGCGATGGGACTGGTTTTCACTTGCATAAAGAAAAAAAGG
TTAAAAATGAGAAATTCCCTTTTCTATGTACAACATATTGACTGTAATTT
CCTTCAACTTTTTTTTTTTCTAATGATGAAGAGTATGAATGTAGCTGCAT
CAAGAAGCAGATTTTGCATAGCTTCTCAGTTCAGGAACACCACTGTACAT
GAATTTGCAAGCTGACTGTACATACCGACCTGCCCTAGAGGCTGCTTTTG
GCAAATAATTGGCAACCTTGCTCCAGATTTACAGGAATGAGAAAGGTACA
TGGATGTTGTAGCAAACCACGAGCACTCCAAAGAAGAATCAGCATCTCTT
AACAGCATTCGACCTTTTTTAAGAGCTGCAGCTGACCCTTTTTGATCGCT
GCTAACTACGTTTGGTATCTGTAAAAGATTAGGATAGGAGGCAGTTGTAG
CTTCTTTGTGATAAAGTCTCTCTAAGCTTTCAACTGGTATATCTTCCTCT
GCCTCCATTTCATTGGTTCTTTCCTTATTTTTTATTTTACTTAGAATCCT
TTTTGCCTCCTTGGTCAATCCAGTGGCACGCCGAGCTTCTGCAAGAAGCA
AGAAGGTGGATTTCTGAGGGTGGACTCCAAATGCTTTCATGATTTGGAGT
ATTTCTTCAGCTCTCCATGGTTGCCTGGCTTCGCTGTATCCCCACATTAG
GGTCTCAAAAGTCTTC
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