DN620967

Overview
NameDN620967
Unique NameDN620967
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN620967 vs. ExPASy Swiss-Prot
Match: RSBQ_BACSU (Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis GN=rsbQ PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.252e-44
Identity = 95/215 (44.19%), Postives = 131/215 (60.93%), Query Frame = 3 
Query:   93 HNVKVTGSGEQVIVLAHGFGTDQSVWKHLVPHLVDDYRVVLYDNMGAGTTNPDYFDFNRYSTLEGYAFDLLAILEELQIDSCILVGHSVSAMIGAIASISRPDLFTKLVMISGSPRYLND-VDYYGGFEQEELDQLFEAMRSNYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFNMRPDIALSVAQTIFQSDMRQILSLVSVPCHIIQSMKDLAVP 734
            ++VKV GSG+  I+ A GFG DQSVW  + P   +D+RV+L+D +G+G ++   +D NRY TL+GYA D+L + E L +   + VGHSV A+IG +ASI RP+LF+ LVM+  SP YLND  +YYGGFE+E+L  L E M  NY  W + FA   +         +E      +  P IA   A+  F SD R+ LS V+VP  I+Q   D+  P
Sbjct:    9 NHVKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPDRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAP 223
The following BLAST results are available for this feature:
BLAST of DN620967 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RSBQ_BACSU6.252e-4444.19Sigma factor sigB regulation protein rsbQ OS=Bacil... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06B02_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620967 ID=DN620967; Name=DN620967; organism=Citrus sinensis; type=EST; length=735bp
CCTTTCCTATCACTTGACAACACAAAAGAAAATAAAAGAAAAGAAAGCTC
CGCAGATTCAGGCGAGGCGAAATGGGAATCGTGGAAGAAGCTCACAACGT
GAAAGTGACGGGGTCAGGGGAGCAAGTGATAGTGTTGGCTCACGGCTTCG
GCACCGACCAGTCGGTGTGGAAGCACCTCGTGCCTCATCTCGTCGACGAT
TACCGCGTCGTTTTGTATGACAACATGGGCGCTGGCACCACCAATCCCGA
CTACTTTGACTTCAACAGATACTCCACCCTCGAAGGCTATGCCTTCGATT
TGCTTGCTATTTTAGAAGAGCTGCAAATTGACTCTTGTATTCTCGTCGGT
CACTCTGTTTCCGCCATGATTGGCGCCATCGCCTCCATCTCCCGCCCTGA
TCTCTTCACTAAACTCGTCATGATCTCCGGCTCTCCTAGGTATCTCAATG
ATGTGGATTACTACGGAGGATTTGAGCAAGAGGAGCTGGATCAGCTTTTT
GAAGCAATGAGGTCAAATTACAAGGCATGGTGCTCTGGATTCGCCCCGCT
AGCTGTCGGCGGGGACATGGACTCGGTGGCTGTTCAAGAATTTAGCCGAA
CCTTATTCAACATGAGACCAGACATAGCCTTGAGTGTGGCACAAACCATT
TTCCAAAGTGACATGAGGCAAATTCTCAGCCTTGTCAGTGTCCCATGCCA
CATAATACAAAGCATGAAGGATTTGGCCGTGCCTG
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