DN620965

Overview
NameDN620965
Unique NameDN620965
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620965 vs. ExPASy Swiss-Prot
Match: LEA5_CITSI (Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.556e-38
Identity = 78/80 (97.50%), Postives = 78/80 (97.50%), Query Frame = -3
Query:  193 GISLSISRRGYDAAAPLGTISRTGIMEKNDLRHAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 432
            GISLSISRRGY AAAPLGTISRTGIMEKNDLR AVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH
Sbjct:   18 GISLSISRRGYAAAAPLGTISRTGIMEKNDLRPAVREDSGASSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRAH 97          
BLAST of DN620965 vs. ExPASy Swiss-Prot
Match: LEA5D_GOSHI (Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 8.235e-19
Identity = 49/87 (56.32%), Postives = 59/87 (67.82%), Query Frame = -3
Query:  196 GISLSISRRGYDAAAPLG---TISRTGIMEKNDLRHAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 432
            G+ +SISRRGY  A P     +  R G M K + R A++E S +     SSAWAPDP+TGYYRPEN   EID AELREMLLNH+VR+
Sbjct:   18 GLYVSISRRGYSGAPPAAVTASFGRPGAMGKVERRDAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAAELREMLLNHRVRS 104          
BLAST of DN620965 vs. ExPASy Swiss-Prot
Match: LEA5A_GOSHI (Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.972e-18
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = -3
Query:  196 LSISRRGYDAAAPLG---TISRTGIMEKNDLRHAVREDSGA-----SSAWAPDPITGYYRPENRAVEIDPAELREMLLNHKVRA 423
            +SISRRGY  A P     +  R G M K + R+A++E S +     SSAWAPDP+TGYYRPEN   EID A+LREM+LNH+VR+
Sbjct:   21 VSISRRGYSGAPPAAVTASFGRPGAMGKVERRYAMKESSSSETRAYSSAWAPDPVTGYYRPENCGAEIDAADLREMMLNHRVRS 104          
The following BLAST results are available for this feature:
BLAST of DN620965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
LEA5_CITSI3.556e-3897.50Late embryogenesis abundant protein Lea5 OS=Citrus... [more]
LEA5D_GOSHI8.235e-1956.32Late embryogenesis abundant protein Lea5-D OS=Goss... [more]
LEA5A_GOSHI6.972e-1854.76Late embryogenesis abundant protein Lea5-A OS=Goss... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06B01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620965 ID=DN620965; Name=DN620965; organism=Citrus sinensis; type=EST; length=434bp
TCTTTACTTTTATTGACAAGTTAATAGACAAAATCATGGAAATGCACTAT
TAAAAGTTGTCAATAACAGTTGATATCAATACAACAGCAAAGACTTATTA
GTGAGTCAAAATTGCTACTGTAACAACATCACTTAAAAAGTTAAAGCACC
GCTAACAGCAAAGGATATGCTGCTATGCGCCACCACTCCCTAGTGTGCCC
TGACTTTGTGGTTCAACAGCATCTCTCGAAGCTCTGCTGGATCAATCTCG
ACCGCCCGATTCTCCGGCCTGTAGTACCCAGTGATGGGATCTGGGGCCCA
GGCAGAAGAGGCCCCAGAATCCTCTCTCACCGCATGCCTCAAATCATTTT
TCTCCATGATACCAGTCCGAGATATGGTCCCCAAGGGTGCTGCTGCATCA
TATCCTCTCCTGCTAATGGAGAGCGAGATGCCAT
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