DN620960

Overview
NameDN620960
Unique NameDN620960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length441
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN620960 vs. ExPASy Swiss-Prot
Match: LFS_ALLCE (Lachrymatory-factor synthase OS=Allium cepa GN=LFS PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.657e-14
Identity = 36/130 (27.69%), Postives = 66/130 (50.77%), Query Frame = 2 
Query:    2 WQGRACEELTGVKAEQIWAFLEDFFGLDKWFPTLTTCIPIQGISGQPGCVRFCAGFKTPVDNKDDDHEQSVNWTKQKLLAINAEEMTLTYSIVDGNVGFYGYVSTLTV--APKENGCYIEWKYEVEPVKG 385
            W G+    L   K EQ W  L+DF  L K  P+L+ C  ++G +   GCVR+  G   P++ +         W K+KL+A++ + M+ +Y   +   G+  Y +T+ +   P+  G   +W ++ + ++G
Sbjct:   21 WSGKVHALLPNTKPEQAWTLLKDFINLHKVMPSLSVCELVEGEANVVGCVRYVKGIMHPIEEE--------FWAKEKLVALDNKNMSYSYIFTECFTGYEDYTATMQIVEGPEHKGSRFDWSFQCKYIEG 142
The following BLAST results are available for this feature:
BLAST of DN620960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
LFS_ALLCE3.657e-1427.69Lachrymatory-factor synthase OS=Allium cepa GN=LFS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06A22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620960 ID=DN620960; Name=DN620960; organism=Citrus sinensis; type=EST; length=441bp
ATGGCAAGGCAGGGCTTGTGAAGAGCTAACAGGCGTGAAAGCTGAACAGA
TATGGGCTTTCTTGGAAGATTTCTTCGGCTTAGACAAGTGGTTTCCAACT
CTAACAACATGCATCCCTATTCAAGGCATTTCTGGGCAGCCCGGCTGCGT
GCGTTTTTGCGCCGGATTCAAAACTCCGGTCGATAATAAAGATGACGATC
ATGAGCAAAGTGTGAACTGGACTAAGCAAAAATTGCTAGCCATCAATGCA
GAGGAAATGACTTTAACCTATTCCATAGTAGATGGAAATGTTGGTTTCTA
TGGATATGTATCGACACTGACAGTGGCGCCTAAGGAGAATGGGTGTTACA
TTGAGTGGAAGTATGAAGTTGAGCCTGTCAAAGGATGGAGACTTGAGGAT
TTGGATTGTTTTATTAGCAGTGGCTTGCAAGTTATGGCTAG
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