DN620955

Overview
NameDN620955
Unique NameDN620955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length747
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620955 vs. ExPASy Swiss-Prot
Match: TM165_RAT (Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.441e-21
Identity = 64/169 (37.87%), Postives = 87/169 (51.48%), Query Frame = 3
Query:  291 SGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQ-----------------XXXXXXXXXXXXSGQGKXXXXXXXXXXXXPIFLESFILTFLAEWGDRSQIAT 746
            + LG   AF+A+ S+IIVSE+GD+TF IAA+MAMR+ + TVL+GA+ AL +MT LS   G     +I R +T   +T L+A FG+R+L       P  GQ                             +G               PIF+++  LTFLAEWGDRSQ+ T
Sbjct:   89 ANLGFIHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFG-YATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVETGTSTAIPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTT 256          
BLAST of DN620955 vs. ExPASy Swiss-Prot
Match: TM165_MOUSE (Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.441e-21
Identity = 64/169 (37.87%), Postives = 87/169 (51.48%), Query Frame = 3
Query:  291 SGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQ-----------------XXXXXXXXXXXXSGQGKXXXXXXXXXXXXPIFLESFILTFLAEWGDRSQIAT 746
            + LG   AF+A+ S+IIVSE+GD+TF IAA+MAMR+ + TVL+GA+ AL +MT LS   G     +I R +T   +T L+A FG+R+L       P  GQ                             +G               PIF+++  LTFLAEWGDRSQ+ T
Sbjct:   89 TNLGFIHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFG-YATTVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVETGTSTAIPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTT 256          
BLAST of DN620955 vs. ExPASy Swiss-Prot
Match: TM165_HUMAN (Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.441e-21
Identity = 65/170 (38.24%), Postives = 88/170 (51.76%), Query Frame = 3
Query:  291 SGLGVFDAFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSG------------------QXXXXXXXXXXXXSGQGKXXXXXXXXXXXXPIFLESFILTFLAEWGDRSQIAT 746
            + LG   AF+A+ S+IIVSE+GD+TF IAA+MAMR+ + TVL+GA+ AL +MT LS   G     +I R +T   +TVL+A FG+R+L       P  G                  Q            +G               PIF+++  LTFLAEWGDRSQ+ T
Sbjct:   89 TNLGFIHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFG-YATTVIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPGDVETGTSITVPQKKWLHFISPIFVQALTLTFLAEWGDRSQLTT 257          
BLAST of DN620955 vs. ExPASy Swiss-Prot
Match: YD68_SCHPO (UPF0016 membrane protein C17G8.08c OS=Schizosaccharomyces pombe GN=SPAC17G8.08c PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.771e-17
Identity = 60/175 (34.29%), Postives = 83/175 (47.43%), Query Frame = 3
Query:  312 AFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIA--WMSDPKSGQXXXXXXXXXXXXSG----------------------------QGKXXXXXXXXXXXXPIFLESFILTFLAEWGDRSQIAT 746
            + I S SMI   EIGD+TFI+AAL+A  + + TV +G+ SALF+MT+L   LG   P L  RK T+    VL+  FG+++L  A   M   +S              +G                            Q K            P+F+++F LTF++EWGDRSQIAT
Sbjct:   49 SLIFSISMIFGCEIGDKTFIVAALLAFENSRLTVFAGSYSALFIMTLLGVLLGHAAPLLFPRKLTDILGGVLFVIFGIKMLMEAKEVMDSKESMSDEFQNVRNEIAANGPIDQLLEEGAAPSHYTGHRSRSGHTLMSQLKSKGRNVMATLFSPLFIKAFALTFVSEWGDRSQIAT 223          
BLAST of DN620955 vs. ExPASy Swiss-Prot
Match: Y615_SYNY3 (UPF0016 membrane protein sll0615 OS=Synechocystis sp. (strain PCC 6803) GN=sll0615 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.954e-16
Identity = 57/145 (39.31%), Postives = 78/145 (53.79%), Query Frame = 3
Query:  312 AFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRLLYIAWMSDPKSGQXXXXXXXXXXXXSGQGKXXXXXXXXXXXXPIFLESFILTFLAEWGDRSQIAT 746
            AF A   +I VSE+GD+TF IA ++AMR+P+  VL G +  L  MT+LS  +G+I   L +R + N A   L+  FG +LL+ A      +              SG+ K             I +ESF LTF+AEWGDR+QIAT
Sbjct:    4 AFTAGLLLITVSELGDKTFFIAMILAMRYPRRWVLVGVVGGLAAMTILSVLMGQIFTFLPTR-YINYAEVALFLIFGTKLLWDA-RRIKATANLEEMEDAEKAIASGEKKLKIVPRGWG----IVVESFALTFVAEWGDRTQIAT 142          
BLAST of DN620955 vs. ExPASy Swiss-Prot
Match: YB37_YEAST (UPF0016 membrane protein YBR187W OS=Saccharomyces cerevisiae GN=YBR187W PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.495e-12
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 3
Query:  312 AFIASFSMIIVSEIGDETFIIAALMAMRHPKSTVLSGALSALFVMTVLSTGLGRIVPNLISRKHTNSAATVLYAFFGLRL 551
            +F+ S SMI +SEIGD+TF+IAALMAMRH +  V S A ++L +MT+LS  +G      +S ++T   A +L+  FG +L
Sbjct:   41 SFLMSVSMIGLSEIGDKTFLIAALMAMRHKRVLVFSAAATSLAIMTILSGVVGHSAVAFLSERYTAFFAGILFLVFGYKL 120          
The following BLAST results are available for this feature:
BLAST of DN620955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TM165_RAT3.441e-2137.87Transmembrane protein 165 OS=Rattus norvegicus GN=... [more]
TM165_MOUSE3.441e-2137.87Transmembrane protein 165 OS=Mus musculus GN=Tmem1... [more]
TM165_HUMAN3.441e-2138.24Transmembrane protein 165 OS=Homo sapiens GN=TMEM1... [more]
YD68_SCHPO8.771e-1734.29UPF0016 membrane protein C17G8.08c OS=Schizosaccha... [more]
Y615_SYNY31.954e-1639.31UPF0016 membrane protein sll0615 OS=Synechocystis ... [more]
YB37_YEAST8.495e-1246.25UPF0016 membrane protein YBR187W OS=Saccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06A19_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006A19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620955 ID=DN620955; Name=DN620955; organism=Citrus sinensis; type=EST; length=747bp
CCCCCTTGGGCGCTTCAGCAAGGTCTCTCTCTCTTTCTCTCTGGCAGATC
TGTTTGTTTCCCTCCAATTCTCTCTAAATTTACGACATGGGTTTGGTTTC
AAACCCCGTCCGCTTTCTCTTCGTCGCCCTTTCCATCTTCTCTGCTCTTT
CTGGCATCTCTGCTCAGGACGTCCTTTTTGAATCCGATAATGAAGACCCA
TCTCGATCTGCTAAAGATCTCGGCCGCCGTGGCTTGATTTTATCGCAAGA
CCTTGAGAATGAACTCGGTACGATCCCTTTGAATATCGACTCGGGTCTTG
GAGTTTTTGATGCCTTCATCGCAAGTTTTTCGATGATCATTGTTAGTGAG
ATTGGAGATGAGACTTTCATAATAGCAGCACTTATGGCAATGCGTCATCC
CAAGTCAACCGTTTTGTCGGGTGCGCTCTCTGCTCTGTTTGTTATGACTG
TACTTTCTACTGGACTAGGTAGGATTGTGCCGAACTTGATATCAAGGAAG
CATACAAATAGTGCTGCTACAGTTCTGTATGCATTTTTTGGGCTGCGGTT
ACTATACATAGCTTGGATGTCAGATCCAAAATCAGGTCAGAAGAAAGAAA
TGGAGGAGGTGGAGGAGAAACTTGAGTCAGGGCAAGGGAAGACAACCTTC
CGCCGTTTCTTCTCAAGATTCTGTACTCCCATATTTCTAGAGTCATTTAT
TTTGACATTCCTGGCAGAGTGGGGAGATCGTAGCCAGATAGCCACAA
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