DN620944

Overview
NameDN620944
Unique NameDN620944
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620944 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.570e-27
Identity = 53/69 (76.81%), Postives = 62/69 (89.86%), Query Frame = -2
Query:  556 VHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 762
            VH+ +IKGSRT WQ MSRNWGQNWQSN+YLNGQ+LSFKVTTSDGRTV S+N APA WS+G+T++G QFR
Sbjct:  181 VHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQFR 249          
BLAST of DN620944 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.767e-27
Identity = 53/69 (76.81%), Postives = 61/69 (88.41%), Query Frame = -2
Query:  556 VHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 762
            VH+  +KGSRTGWQ MSRNWGQNWQSN+YLNGQSLSFKVTTSDG+T+ S NVA A WSFG+T++GAQ R
Sbjct:  182 VHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGWSFGQTFTGAQLR 250          
BLAST of DN620944 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.276e-26
Identity = 54/69 (78.26%), Postives = 62/69 (89.86%), Query Frame = -2
Query:  556 VHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 762
            VH+VS+KGSRT WQ MSRNWGQNWQSN+YLNGQSLSF VTTSD R+V S+NVAP +WSFG+TY+G QFR
Sbjct:  186 VHSVSMKGSRTKWQLMSRNWGQNWQSNSYLNGQSLSFVVTTSDRRSVVSFNVAPPTWSFGQTYTGGQFR 254          
BLAST of DN620944 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.276e-26
Identity = 53/69 (76.81%), Postives = 61/69 (88.41%), Query Frame = -2
Query:  556 VHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 762
            VH+V++KGSRT WQ MSRNWGQNWQSN  LNGQ+LSFKVT SDGRTV S N+APASWSFG+T++G QFR
Sbjct:  185 VHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASWSFGQTFTGRQFR 253          
BLAST of DN620944 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 8.269e-26
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = -2
Query:  559 VHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 762
            V +VSIKGS TGWQPMSRNWGQNWQSN+YL+GQSLSF+V  SDGRTVTS NV PA W FG+T+ G QF
Sbjct:  184 VQSVSIKGSSTGWQPMSRNWGQNWQSNSYLDGQSLSFQVAVSDGRTVTSNNVVPAGWQFGQTFEGGQF 251          
BLAST of DN620944 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.406e-25
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = -2
Query:  559 VHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 762
            V +VSIKGSRTGWQPMSRNWGQNWQSN +L+GQSLSF+VT SDGRTVTS NVA   W FG+T+ G QF
Sbjct:  179 VRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQF 246          
BLAST of DN620944 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.406e-25
Identity = 52/68 (76.47%), Postives = 58/68 (85.29%), Query Frame = -2
Query:  559 VHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 762
            V +VSIKGSRTGWQPMSRNWGQNWQSN +L+GQSLSF+VT SDGRTVTS NVA   W FG+T+ G QF
Sbjct:  179 VRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQF 246          
BLAST of DN620944 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.660e-24
Identity = 51/69 (73.91%), Postives = 60/69 (86.96%), Query Frame = -2
Query:  559 VHAVSIKGSRT-GWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 762
            VHAVSIKGS+T  WQ MSRNWGQNWQSN+Y+N QSLSF+VTTSDGRT+ S +VAP++W FG+TY G QF
Sbjct:  185 VHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNWQFGQTYQGGQF 253          
BLAST of DN620944 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.252e-23
Identity = 50/69 (72.46%), Postives = 57/69 (82.61%), Query Frame = -2
Query:  556 VHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 762
            V +VSIKG+ T WQ MSRNWGQNWQSN  L+GQ+LSFKVTTSDGRTV S N  P +WSFG+TY+G QFR
Sbjct:  184 VISVSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNWSFGQTYTGKQFR 252          
BLAST of DN620944 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.016e-23
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = -2
Query:  559 VHAVSIKGSRTG-WQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 762
            + AVS+KGS+T  WQ MSRNWGQNWQSNTYL GQSLSF+VT SDGRTV SY+V P  W FG+T+ G QF
Sbjct:  187 IRAVSLKGSKTDQWQSMSRNWGQNWQSNTYLRGQSLSFQVTDSDGRTVVSYDVVPHDWQFGQTFEGGQF 255          
The following BLAST results are available for this feature:
BLAST of DN620944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
EXP10_ARATH2.570e-2776.81Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA1_ARATH9.767e-2776.81Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXPA5_ARATH1.276e-2678.26Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXP15_ARATH1.276e-2676.81Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXPA2_ORYSJ8.269e-2676.47Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSJ2.406e-2576.47Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI2.406e-2576.47Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA8_ARATH2.660e-2473.91Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXP14_ARATH2.252e-2372.46Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA2_ARATH5.016e-2371.01Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06A12_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620944 ID=DN620944; Name=DN620944; organism=Citrus sinensis; type=EST; length=763bp
AAAGTAGCACTTTTCCGTTGATTAATTAAAATGAAATGGAAATTTACACC
TCCAATCTCGTACAAATTTAGCCATTACATCCAACGACATAATACTCAGC
CAAATCTGCTGATTACAATTAAACTTGCACTCCAAAAAGTGCTTCTGGGC
AAGCAATTCCAAGAAGCATCAAAAAAAGAGAAGCAGCTATTTCAAACACA
AATGGCGGGTGGAAAAATTTCCACCTCAGCCATCTGTTGCACTTCAACAG
AAACCCCCAAAAAGAAAGGTAAAAAAAGGATCCCCAAGATAATAAGAGGA
TCCCATAATTAGACACCCCACGCAACCATAAAAATCAATTCAAAATGAAA
AAAAATAAGCCATTTTAAAATAAGCCCCTTTTTTTCATTTTTGACCCTGG
AAGCCAAAAACTAGCCACATAGCTACTTCTATATTATATATATATATATA
TACCCTAGTATGCTAAAATTTCATACTAAAATATACTACTTAGTACACGA
ATATTTAGCTAAAAAAGGTGTTAAAACCCAATCTCTAATGGTCTTGGTGG
CTCTAGCGGAATTGAGCACCGGAGTAAGTTCGGCCAAAGGACCAGCTAGC
AGGGGCAACATTGTAGGAAGTCACAGTGCGGCCATCGCTTGTGGTGACCT
TAAATGACAGGCTTTGGCCATTGAGATAAGTGTTGCTTTGCCAGTTTTGG
CCCCAGTTTCTTGACATGGGCTGCCAGCCAGTTCTAGACCCTTTGATTGA
AACAGCATGAACA
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