DN620942

Overview
NameDN620942
Unique NameDN620942
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620942 vs. ExPASy Swiss-Prot
Match: YGHX_ECOLI (Putative uncharacterized protein yghX OS=Escherichia coli (strain K12) GN=yghX PE=5 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.139e-14
Identity = 52/166 (31.33%), Postives = 80/166 (48.19%), Query Frame = -3
Query:  233 EAQHLMSGLDWPGAVKDIHASVNWLKA--NGSKKVGVTGYCMGGALAIASSVLVPEVDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXASGVPYEVHIYPGSAHAFMNISPDGVKRRKEMGMDDHDPAAVELAWSRFQSWMTRYLS 724
            + + L   +D    + D  A++ +++     + KVG+TG+C GG ++ A++V  PE+   V FYG   P  AD  + +AP+  HF ELD  +     +          A+   YE +IYPG  H F N   D   R        +D +A +LAW R   W  +YLS
Sbjct:  129 KGRELQQQVDPTNLMNDFFAAIEFMQRYPQATGKVGITGFCYGGGVSNAAAVAYPELACAVPFYGRQAP-TADVAKIEAPLLLHFAELDTRIN----EGWPAYEAALKANNKVYEAYIYPGVNHGFHN---DSTPR--------YDKSAADLAWQRTLKWFDKYLS 278          
BLAST of DN620942 vs. ExPASy Swiss-Prot
Match: USF_AQUPY (Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.260e-13
Identity = 60/189 (31.75%), Postives = 86/189 (45.50%), Query Frame = -3
Query:  233 ALIPDLYRGKVGLDTAEAQHLMSGL-----DWPGAVKDIHASVNWLKA---NGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXASGVPYEVHIYPGSAHAFMNISPDGVKRRKEMGMDDHDPAAVELAWSRFQSWMTRYLS 772
            A  PD Y GK   +  +A  LM+ +     D   A+    ASV++LK       KKVGVTG+C GG L++  +   P+ +DA V FYG+P     D    K P+     E D FV   +V            +GV  +V +Y G  HAF+N          E   D +DP   + AW+   ++   YL+
Sbjct:   58 AFAPDFYEGKYADNPDDAGKLMTDMFENRMDKVDAI--FKASVDFLKECRYTSPKKVGVTGFCCGGTLSMYFAGKFPDLIDASVPFYGLPQITKIDAENIKVPIFFILAEKDEFVNNDEV---IDIAKKVWKNGVDVKVKVYSGVTHAFLN----------EKREDVYDPCRAQDAWNLTVAFFKEYLT 231          
BLAST of DN620942 vs. ExPASy Swiss-Prot
Match: DLHH_AQUAE (Putative carboxymethylenebutenolidase OS=Aquifex aeolicus GN=aq_1997 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.480e-11
Identity = 55/186 (29.57%), Postives = 81/186 (43.55%), Query Frame = -3
Query:  236 ALIPDLYRGKVGLDTAEAQHLMSGL---DWPGAVKDIHASVNWLKA---NGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXASGVPYEVHIYPGSAHAFMNISPDGVKRRKEMGMDDHDPAAVELAWSRFQSWMTRYL 772
            A  PD Y+G+   +  +A  LM+ +         +   ASV ++K       KKVG+TG+C GG LA+  +   PE VDA + FYG+P     +    K P+     E D FV   +V            +GV  +V ++ G  HAF+N          E   D +DP     AW    ++   YL
Sbjct:   58 AFAPDFYKGQYADNPDDAGKLMTEMFEKRMDEVDRIFQASVEFVKECRYTYPKKVGITGFCCGGTLAMYFAAKFPEMVDASLPFYGLPQLTQINAENIKVPIFFILAEKDEFVNNDEV---IDIAKTVWKNGVDVQVKVFSGVTHAFLN----------EKREDVYDPKRACEAWELAVNFFKTYL 230          
The following BLAST results are available for this feature:
BLAST of DN620942 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YGHX_ECOLI1.139e-1431.33Putative uncharacterized protein yghX OS=Escherich... [more]
USF_AQUPY1.260e-1331.75Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1[more]
DLHH_AQUAE4.480e-1129.57Putative carboxymethylenebutenolidase OS=Aquifex a... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06A11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620942 ID=DN620942; Name=DN620942; organism=Citrus sinensis; type=EST; length=777bp
TTTTTTTTCCACAAGTATGTGAAGTTCACCTCTTGTGATAATCAATAAGC
CTTCAGCAAACATACAATATAGGCAAACTACAAACAGACATATCCCAGTA
TCGAACCCCTTTGGAAACAAAAGGATACTTGCAGCTGTGTTATGTAGAGT
AGAGGCATACACACAGTTATTTATTTAATGATGGAAGCGAGGTAAACACC
ATAGATTCATAATACTAGTGAATTACTTAAGCAGATAAGTAGCGGGTCAT
CCATGATTGGAAGCGAGACCACGCCAGCTCAACTGCGGCTGGATCGTGAT
CATCCATTCCCATTTCTTTCCTCCTCTTCACTCCATCCGGAGAAATGTTC
ATGAAAGCATGTGCACTGCCAGGATAAATATGTACCTCATATGGAACACC
AGATGCTTTCAGCTTTTCCTCCAATGCTTTGGCAGTTTTCACATCTGAAA
AGCCAACAAAATTGTCAAGCTCCCCAAAATGAGCTTGAACAGGTGCCTTA
GCCTGGGTAGGATCGGCGAGCTCAGGTGGGGGAACCCCATAAAATGAAAC
AACAGCATCAACCTCAGGAACTAAGACAGAACTTGCAATAGCGAGAGCAC
CTCCCATGCAATATCCAGTCACGCCAACCTTCTTGGAACCATTTGCCTTA
AGCCAATTAACTGAAGCGTGGATATCCTTGACAGCACCTGGCCAATCAAG
ACCACTCATCAAGTGCTGTGCTTCAGCAGTATCCAAACCAACCTTTCCCC
GATATAAATCTGGTATAAGTGCCTTGA
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