DN620940

Overview
NameDN620940
Unique NameDN620940
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620940 vs. ExPASy Swiss-Prot
Match: ISPE_ARATH (4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic OS=Arabidopsis thaliana GN=ISPE PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.468e-64
Identity = 114/156 (73.08%), Postives = 132/156 (84.62%), Query Frame = -2
Query:  304 AAYCTGRGEVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDPLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMXXXXXXXXXXXSPDPPQFIYDDNEYEDVFLSEARFITREVNQWYREPASTNA 771
            AAYCTGRGE+VQD+PPP PLD+PMVLIKPREAC TAEVYK LRLDQT+ ++PLTLLE ++ NG+SQ +C+NDLE PAF VLPSLKRLKQRIIA+GRG+YDAVFM           SPDPPQFIYDD EY++VFLSEA F+TRE N+WY+EPAS NA
Sbjct:  216 AAYCTGRGEIVQDLPPPFPLDLPMVLIKPREACSTAEVYKRLRLDQTSNINPLTLLENVTSNGVSQSICVNDLEPPAFSVLPSLKRLKQRIIASGRGEYDAVFMSGSGSTIIGIGSPDPPQFIYDDEEYKNVFLSEANFMTREANEWYKEPASANA 371          
BLAST of DN620940 vs. ExPASy Swiss-Prot
Match: ISPE_SOLLC (4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic (Fragment) OS=Solanum lycopersicum GN=ISPE PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.541e-63
Identity = 115/164 (70.12%), Postives = 133/164 (81.10%), Query Frame = -2
Query:  280 AAYCTGRGEVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDPLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMXXXXXXXXXXXSPDPPQFIYDDNEYEDVFLSEARFITREVNQWYREPASTNACSEPPAFS 771
            AAYCTGRGEVVQDIP PIP D+PMVLIKP++AC TAEVYK  +LD ++KVDPL+LLE+IS +G+SQDVC+NDLE PAF+VLPSLKRLKQR+IAAGRGQYDAVFM           SPDPPQF+YDD EY+DVFLSEA FITR  N+WY EP S +   + P FS
Sbjct:  232 AAYCTGRGEVVQDIPSPIPFDIPMVLIKPQQACSTAEVYKRFQLDLSSKVDPLSLLEKISTSGISQDVCVNDLEPPAFEVLPSLKRLKQRVIAAGRGQYDAVFMSGSGSTIVGVGSPDPPQFVYDDEEYKDVFLSEASFITRPANEWYVEPVSGSTIGDQPEFS 395          
BLAST of DN620940 vs. ExPASy Swiss-Prot
Match: ISPE_MENPI (4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic OS=Mentha piperita GN=ISPE PE=1 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.688e-61
Identity = 111/165 (67.27%), Postives = 133/165 (80.61%), Query Frame = -2
Query:  277 AAYCTGRGEVVQDIPPPIPLDVPMVLIKPREACPTAEVYKHLRLDQTTKVDPLTLLEQISRNGLSQDVCINDLEAPAFQVLPSLKRLKQRIIAAGRGQYDAVFMXXXXXXXXXXXSPDPPQFIYDDNEYEDVFLSEARFITREVNQWYREPASTNACSEPPAFSE 771
            AAYCTGRGEVV+DIPPP+P D+ MVL+KP+EACPT EVYK LRLDQT+ +DPL LLE+IS+ G+SQDVC+NDLE PAF+V+PSLKRLKQRI AAGR QYDAVFM           SPDPPQF+YD +EY+++F SEA+FITR  NQWY EP ST+   E P+F +
Sbjct:  241 AAYCTGRGEVVEDIPPPVPRDLSMVLMKPQEACPTGEVYKRLRLDQTSDIDPLVLLEKISKGGISQDVCVNDLEPPAFEVVPSLKRLKQRIAAAGRSQYDAVFMSGSGSTIVGVGSPDPPQFVYDGDEYKNIFFSEAKFITRSANQWYSEPLSTD---ESPSFPQ 402          
The following BLAST results are available for this feature:
BLAST of DN620940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ISPE_ARATH3.468e-6473.084-diphosphocytidyl-2-C-methyl-D-erythritol kinase,... [more]
ISPE_SOLLC6.541e-6370.124-diphosphocytidyl-2-C-methyl-D-erythritol kinase,... [more]
ISPE_MENPI4.688e-6167.274-diphosphocytidyl-2-C-methyl-D-erythritol kinase,... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_06A10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620940 ID=DN620940; Name=DN620940; organism=Citrus sinensis; type=EST; length=772bp
CCCTTTTATTAAAGGATAAAATTTGTATTGAACTATGAAAGTAAAATCTC
TCATATTTTTTAATCCATAGCTTCAACACATTTGGTAACTCATGATCAGT
TGTATAGAAAATACATAATATGACAACAGATTTAATTTTAAATCCGTATG
TAAAACTTAGATTACCTACAACGAACGAACGTAGGCATCCTATGTCACAT
AAAATGAAGTAGCACAACAGTAAATTGAACAAGTTGTGTTATCAATTTCT
TCATTATCAAGACATCACCCCACAGTTTCGGAAAATGCAGGGGGTTCGCT
GCAAGCATTTGTTGAAGCAGGTTCTCTATACCACTGATTCACTTCGCGAG
TGATAAATCTAGCCTCTGACAAAAAGACATCCTCATATTCATTGTCATCA
TAGATAAACTGTGGAGGGTCTGGGGAACCGATACCAACAATAGTGCTACC
ACTGCCAGACATAAACACAGCATCATATTGTCCACGACCAGCTGCAATTA
TACGCTGTTTTAATCTTTTAAGAGATGGGAGAACTTGAAATGCTGGTGCT
TCTAAATCATTAATACAAACGTCTTGAGACAATCCATTCCTAGAAATCTG
CTCGAGCAATGTTAAAGGATCAACCTTAGTGGTCTGATCAAGTCGAAGAT
GCTTGTACACTTCAGCTGTGGGACATGCCTCCCTGGGCTTTATAAGAACC
ATTGGAACATCCAAAGGTATGGGTGGGGGAATATCTTGAACAACCTCACC
TCTACCAGTACAATACGCTGCT
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