DN620933

Overview
NameDN620933
Unique NameDN620933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS8_MAIZE (40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 3.361e-64
Identity = 128/173 (73.99%), Postives = 133/173 (76.88%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIE 569
            MGISRDSMH                 YELGRQPANTKLSSNKTVRR+RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGR                 +A A EE KKS+HV RKLEKR++ RTLDPHIE
Sbjct:    1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKTPAAKKDNAEGQEVEA-AAEETKKSNHVTRKLEKRKEGRTLDPHIE 172          
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS8_ORYSJ (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2)

HSP 1 Score: 243.817 bits (621), Expect = 4.389e-64
Identity = 131/174 (75.29%), Postives = 135/174 (77.59%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXDAPA-TEEAKKSSHVLRKLEKRQKDRTLDPHIE 569
            MGISRDSMH                 YELGRQPANTKLSSNKTVRR+RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGR                 DA A TEEAKKS+HV+RKLEKRQ+ RTLD HIE
Sbjct:    1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGR---KKKAPAAKKDAEGQDAEATTEEAKKSNHVVRKLEKRQQGRTLDAHIE 171          
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS8_PRUAR (40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 4.108e-62
Identity = 126/173 (72.83%), Postives = 131/173 (75.72%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIE 569
            MGISRDSMH                 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGN+SWGSEAVTRKTR+LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV+IGR                     TEEAKKS+HV  KLEKRQ+ RTLD HIE
Sbjct:    1 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGR---KKKTAAAKKDTPEEGEATTEEAKKSNHVAIKLEKRQQGRTLDAHIE 170          
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS82_ARATH (40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 5.022e-60
Identity = 123/173 (71.10%), Postives = 129/173 (74.57%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIE 569
            MGISRDS+H                 YELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGN+SWGSEAVTRKTRILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGVDIGR                 +A  TEE KKS+HV RKLE RQ+ R LD H+E
Sbjct:    1 MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGR-------------KKKGEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLE 160          
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS81_ARATH (40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 4.251e-59
Identity = 118/174 (67.82%), Postives = 129/174 (74.14%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXDA-PATEEAKKSSHVLRKLEKRQKDRTLDPHIE 569
            MGISRDS+H                 YE+GRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEA TRKTR+LDVVYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV++GR                  A  A EE KKS+H+LRK+  RQ+ R+LD HIE
Sbjct:    1 MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIE 174          
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS8_DICDI (40S ribosomal protein S8 OS=Dictyostelium discoideum GN=rps8 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.742e-39
Identity = 89/176 (50.57%), Postives = 109/176 (61.93%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSN---KTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIE 569
            MGISRD++H                 YELGRQ A TK+ S    K VR IRVRGG+ K+RALRLDTGN+SW +E +TRK RIL+VVYNA++N+LVRT TLVK +IVQ+DA P+KQWY  HYGV +G+                 D  A +  KKS+ +L KL  R K R LD  IE
Sbjct:    1 MGISRDALHKHRLTGAARKCNYKKRKYELGRQAAKTKICSQGEEKRVRSIRVRGGHQKFRALRLDTGNFSWATEKITRKCRILNVVYNATSNDLVRTNTLVKGSIVQIDATPYKQWYETHYGVVVGK-----------KKSAKKDGEAEQVVKKSASLLAKLASRAKGRVLDSAIE 165          
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS8_ICTPU (40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3)

HSP 1 Score: 157.532 bits (397), Expect = 4.137e-38
Identity = 84/176 (47.73%), Postives = 108/176 (61.36%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXDAPATEE---AKKSSHVLRKLEKRQKDRTLDPHIE 569
            MGISRD+ H                 YELGR P+NTKL   K +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ ++ VD+APF+QWY  HY + +GR                   P  E+    K+S  V +K +KR+K+  + P ++
Sbjct:    1 MGISRDNWHKRRKTGGKRKPVHKKRKYELGRPPSNTKLGP-KRIHTVRVRGGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVILVDSAPFRQWYESHYALPLGRKKGAKL------------TPEEEDILNKKRSKKVQKKFDKRRKNSKISPLLD 163          
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS8_THEPA (40S ribosomal protein S8 OS=Theileria parva GN=RPS8 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.738e-36
Identity = 75/124 (60.48%), Postives = 93/124 (75.00%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 422
            MGISRDS H                 YELGR  +NTKL S K VR++R RGGN+K+RALRLD+GN+SWGS+ VTRKTR++DVVYNAS+NELVRT+TLVK+AIV VD  PFK W+  HYG+++G+
Sbjct:    1 MGISRDSRHKRRLTGGRYPVHKKKRKYELGRPSSNTKLGS-KLVRKVRCRGGNLKFRALRLDSGNFSWGSQNVTRKTRVMDVVYNASSNELVRTKTLVKNAIVTVDPTPFKLWFKTHYGLELGK 123          
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS8_GRIJA (40S ribosomal protein S8 OS=Griffithsia japonica GN=RPS8 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 3.872e-36
Identity = 75/124 (60.48%), Postives = 90/124 (72.58%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 422
            MGISRDS H                 YELGRQPA TK+   K VR +RVRGGN+K RALRL++GN++WGSEA T K+RIL+VVYNASNNELVRT T VK  I+Q+DA PF+Q+Y  HYG+DIG+
Sbjct:    1 MGISRDSRHKRRLTGGKHPYTCKKRKYELGRQPAMTKIGG-KLVRTVRVRGGNLKSRALRLESGNFAWGSEAFTSKSRILNVVYNASNNELVRTNTFVKGCIIQIDATPFRQYYHNHYGIDIGK 123          
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS8_CAEEL (40S ribosomal protein S8 OS=Caenorhabditis elegans GN=rps-8 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.605e-36
Identity = 80/169 (47.34%), Postives = 103/169 (60.95%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXDAPATEEAKKSSHVLRKLEKRQKDRTLD 557
            MGISRDS H                 +ELGR  ANTK+ +++ VR +R RGGN K+RALRLD+GN+SW SE  TRKTRI+D +YNA+NNELVRT+TLVK AI+ VDAAPF+QWY  HY + + R                 +  A    K+S H ++K  +RQK   +D
Sbjct:    1 MGISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHR-VRLVRTRGGNEKYRALRLDSGNFSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLAR---------KKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAVD 159          
The following BLAST results are available for this feature:
BLAST of DN620933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8_MAIZE3.361e-6473.9940S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 ... [more]
RS8_ORYSJ4.389e-6475.2940S ribosomal protein S8 OS=Oryza sativa subsp. ja... [more]
RS8_PRUAR4.108e-6272.8340S ribosomal protein S8 OS=Prunus armeniaca GN=RP... [more]
RS82_ARATH5.022e-6071.1040S ribosomal protein S8-2 OS=Arabidopsis thaliana... [more]
RS81_ARATH4.251e-5967.8240S ribosomal protein S8-1 OS=Arabidopsis thaliana... [more]
RS8_DICDI3.742e-3950.5740S ribosomal protein S8 OS=Dictyostelium discoide... [more]
RS8_ICTPU4.137e-3847.7340S ribosomal protein S8 OS=Ictalurus punctatus GN... [more]
RS8_THEPA1.738e-3660.4840S ribosomal protein S8 OS=Theileria parva GN=RPS... [more]
RS8_GRIJA3.872e-3660.4840S ribosomal protein S8 OS=Griffithsia japonica G... [more]
RS8_CAEEL6.605e-3647.3440S ribosomal protein S8 OS=Caenorhabditis elegans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06A06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620933 ID=DN620933; Name=DN620933; organism=Citrus sinensis; type=EST; length=571bp
CTATCAATCGCCCACGGACAGAGAAACCCTAAGAATTTCTCTCTGCGAAA
ATGGGTATTTCCCGTGATTCCATGCACAAGAGGCGTGCTACTGGGGGCAA
GAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAGCTTGGAAGGCAACCTG
CAAATACTAAGCTATCAAGCAACAAGACAGTGAGGAGGATTAGGGTTCGT
GGAGGTAATGTGAAATGGCGTGCTTTGAGGCTTGACACAGGAAACTACTC
CTGGGGAAGCGAAGCAGTGACTCGTAAGACCAGAATTCTGGATGTGGTAT
ACAATGCCTCCAATAATGAGCTGGTCCGTACTCAAACTTTGGTGAAGAGT
GCCATTGTTCAGGTTGATGCAGCACCATTCAAGCAGTGGTATCTCCAGCA
TTATGGTGTTGACATTGGTCGCAAGAAGAAGGCTGCAGCTGCTGCCACAA
CCGAGAAAGAAGGAGAGGAAGGAGACGCTCCTGCCACTGAGGAGGCAAAG
AAGAGCAGCCATGTCTTGAGAAAGCTTGAGAAGCGTCAAAAAGATCGCAC
ACTTGACCCACATATTGAGGA
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