DN620932

Overview
NameDN620932
Unique NameDN620932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620932 vs. ExPASy Swiss-Prot
Match: RS8_MAIZE (40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.097e-60
Identity = 119/144 (82.64%), Postives = 125/144 (86.81%), Query Frame = -2
Query:  160 EAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXKEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQR 591
            EAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGR            EG+E +A A EE KKS+HV RKLEKR++ RTLDPHIEEQFGSGRLLACI+SRPGQCGRADGYILEGKELEFYMKKLQR
Sbjct:   71 EAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKTPAAKKDNAEGQEVEA-AAEETKKSNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 213          
BLAST of DN620932 vs. ExPASy Swiss-Prot
Match: RS8_ORYSJ (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 9.287e-60
Identity = 119/144 (82.64%), Postives = 126/144 (87.50%), Query Frame = -2
Query:  160 EAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXKEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQR 591
            EAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGR            EG++ +A  TEEAKKS+HV+RKLEKRQ+ RTLD HIEEQFGSGRLLACI+SRPGQCGRADGYILEGKELEFYMKKLQR
Sbjct:   71 EAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDA-EGQDAEA-TTEEAKKSNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQR 212          
BLAST of DN620932 vs. ExPASy Swiss-Prot
Match: RS8_PRUAR (40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.652e-56
Identity = 114/144 (79.17%), Postives = 122/144 (84.72%), Query Frame = -2
Query:  160 EAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXKEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQR 591
            EAVTRKTR+LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV+IGR            E  EG+A  TEEAKKS+HV  KLEKRQ+ RTLD HIEEQFG G+LLACI+SRPGQCG+ADG ILEGKELEFYMKKLQR
Sbjct:   71 EAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAAKKDTPE--EGEA-TTEEAKKSNHVAIKLEKRQQGRTLDAHIEEQFGGGKLLACISSRPGQCGKADGDILEGKELEFYMKKLQR 211          
BLAST of DN620932 vs. ExPASy Swiss-Prot
Match: RS82_ARATH (40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.388e-55
Identity = 112/144 (77.78%), Postives = 119/144 (82.64%), Query Frame = -2
Query:  160 EAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXKEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQR 591
            EAVTRKTRILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGVDIGR              ++G+A  TEE KKS+HV RKLE RQ+ R LD H+EEQF SGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ+
Sbjct:   71 EAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRK-------------KKGEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQK 201          
BLAST of DN620932 vs. ExPASy Swiss-Prot
Match: RS81_ARATH (40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 8.995e-55
Identity = 106/145 (73.10%), Postives = 119/145 (82.07%), Query Frame = -2
Query:  160 EAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXKE-GEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQR 591
            EA TRKTR+LDVVYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV++GR            E GEE    A EE KKS+H+LRK+  RQ+ R+LD HIE+QF SGRLLACI+SRPGQCGRADGYILEGKELEFYMKK+Q+
Sbjct:   71 EATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQK 215          
BLAST of DN620932 vs. ExPASy Swiss-Prot
Match: RS8_ICTPU (40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 9.037e-39
Identity = 79/143 (55.24%), Postives = 104/143 (72.73%), Query Frame = -2
Query:  163 EAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXKEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ 591
            E  TRKTRI+DVVYNASNNELVRT+TLVK+ ++ VD+APF+QWY  HY + +GR              EE D    + +KK   V +K +KR+K+  + P ++EQF  G+LLACI+SRPGQCGRADGY+LEGKELEFY++K++
Sbjct:   70 ECCTRKTRIIDVVYNASNNELVRTKTLVKNCVILVDSAPFRQWYESHYALPLGRKKGAKLTP------EEEDILNKKRSKK---VQKKFDKRRKNSKISPLLDEQFQQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIK 203          
BLAST of DN620932 vs. ExPASy Swiss-Prot
Match: RS8_DROME (40S ribosomal protein S8 OS=Drosophila melanogaster GN=RpS8 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.991e-38
Identity = 79/143 (55.24%), Postives = 102/143 (71.33%), Query Frame = -2
Query:  163 EAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXKEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ 591
            E V RKTRI DVVYNASNNELVRT+TLVK++IV +DA PF+QWY  HY + +GR              ++ D       K+S  V++K  +RQK   ++  +E+QF SGR+LACI+SRPGQCGR+DGYILEGKELEFY+KK++
Sbjct:   70 EGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLPLGRKRNPK-------HAQKEDENDVLTKKRSEKVMKKYLERQKYGKVEQALEDQFTSGRILACISSRPGQCGRSDGYILEGKELEFYLKKIK 205          
BLAST of DN620932 vs. ExPASy Swiss-Prot
Match: RS8_XENLA (40S ribosomal protein S8 OS=Xenopus laevis GN=rps8 PE=2 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 1.704e-37
Identity = 79/146 (54.11%), Postives = 100/146 (68.49%), Query Frame = -2
Query:  163 EAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXKEGEEGDAPATEEA---KKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ 591
            E  TRKTRI+DVVYNASNNELVRT+TLVK+ I+ VD+ PF+QW+  HY + +GR                   P  EE    K+S    +K E+R+K   + P +EEQF  G+LLACIASRPGQCGRADGY+LEGKELEFY++K++
Sbjct:   70 ECCTRKTRIIDVVYNASNNELVRTKTLVKNCILLVDSTPFRQWFEAHYALPLGRKKGAKL------------TPEEEEILNKKRSKKTQKKYEERKKTAKISPLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 203          
BLAST of DN620932 vs. ExPASy Swiss-Prot
Match: RS8_APIME (40S ribosomal protein S8 OS=Apis mellifera GN=RpS8 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.226e-37
Identity = 80/143 (55.94%), Postives = 100/143 (69.93%), Query Frame = -2
Query:  163 EAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXKEGEEGDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ 591
            E  TRKTRI+DVVYNASNNELVRT+TLVK+AIV +DA PF+QWY  HY + +GR            E EE         K+S     K + RQ+   ++P +EEQF +GR+LACI+SRPGQCGR DGYILEGKELEFYM++++
Sbjct:   70 ECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEGHYVLPLGRKRGAKLT-----EAEE----EVLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLACISSRPGQCGREDGYILEGKELEFYMRRIK 203          
BLAST of DN620932 vs. ExPASy Swiss-Prot
Match: RS8_RAT (40S ribosomal protein S8 OS=Rattus norvegicus GN=Rps8 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 2.907e-37
Identity = 77/146 (52.74%), Postives = 101/146 (69.18%), Query Frame = -2
Query:  163 EAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXKEGEEGDAPATEEA---KKSSHVLRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ 591
            E  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                   P  EE    K+S  + +K ++R+K+  +   +EEQF  G+LLACIASRPGQCGRADGY+LEGKELEFY++K++
Sbjct:   70 ECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKL------------TPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIK 203          
The following BLAST results are available for this feature:
BLAST of DN620932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8_MAIZE1.097e-6082.6440S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 ... [more]
RS8_ORYSJ9.287e-6082.6440S ribosomal protein S8 OS=Oryza sativa subsp. ja... [more]
RS8_PRUAR3.652e-5679.1740S ribosomal protein S8 OS=Prunus armeniaca GN=RP... [more]
RS82_ARATH1.388e-5577.7840S ribosomal protein S8-2 OS=Arabidopsis thaliana... [more]
RS81_ARATH8.995e-5573.1040S ribosomal protein S8-1 OS=Arabidopsis thaliana... [more]
RS8_ICTPU9.037e-3955.2440S ribosomal protein S8 OS=Ictalurus punctatus GN... [more]
RS8_DROME9.991e-3855.2440S ribosomal protein S8 OS=Drosophila melanogaste... [more]
RS8_XENLA1.704e-3754.1140S ribosomal protein S8 OS=Xenopus laevis GN=rps8... [more]
RS8_APIME2.226e-3755.9440S ribosomal protein S8 OS=Apis mellifera GN=RpS8... [more]
RS8_RAT2.907e-3752.7440S ribosomal protein S8 OS=Rattus norvegicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06A06_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620932 ID=DN620932; Name=DN620932; organism=Citrus sinensis; type=EST; length=592bp
AACACAAGGTTCGAAATACAAGTTCAACTGCTGATATCATCTCAACTCTC
CAAGTTTTAACTGGAGACTAAAAACAAGAACACAAGACAAAACTAGAAAT
TCCAGTACGGAGTTTCAATAAACAAAAATTTAAGCAGCACCAGCACCCTT
GCCCTTCTTCCTCTGTAACTTCTTCATGTAGAATTCCAGCTCTTTACCCT
CCAAGATGTATCCATCAGCACGTCCACACTGGCCGGGCCGTGATGCGATA
CAAGCTAACAAACGACCACTACCAAACTGCTCCTCAATATGTGGGTCAAG
TGTGCGATCTTTTTGACGCTTCTCAAGCTTTCTCAAGACATGGCTGCTCT
TCTTTGCCTCCTCAGTGGCAGGAGCGTCTCCTTCCTCTCCTTCTTTCTTG
GTTGTGGCAGCAGCTGCAGCCTTCTTCTTGCGACCAATGTCAACACCATA
ATGCTGGAGATACCACTGCTTGAATGGTGCTGCATCAACCTGAACAATGG
CACTCTTCACCAAAGTTTGAGTACGGACCAGCTCATTATTGGAGGCATTG
TATACCACATCCAGAATTCTGGTCTTACGAGTCACTGCTTCG
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