DN620913

Overview
NameDN620913
Unique NameDN620913
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN620913 vs. ExPASy Swiss-Prot
Match: SKI16_ARATH (F-box protein SKIP16 OS=Arabidopsis thaliana GN=SKIP16 PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 1.177e-51
Identity = 94/146 (64.38%), Postives = 112/146 (76.71%), Query Frame = 2 
Query:   20 MGLEIVGDLALNVILSGLGPKDTAKVACLSKRFKAAASEECLWSKFCXXXXXXXXXXXXXGNPAPSFKAAYQIWREAFGMYPWPLVKRVKRCWDRLKNWLAENFPEAKATLRKGASEADIQQLEKSLKVKLPVPTRILYRFCDGQE 457
            MGLE  GDL L+++LS +GP++TA+VAC+SKR K +ASEE LWS FC             G+PAPSFK AYQ+WRE+F MYPW LVKRV+ CWD LK WL  NFPEAKATLRKG +E D+Q+ E SLKVKLP+PTR+LYRF DGQE
Sbjct:    1 MGLEDAGDLVLHIVLSKIGPENTARVACVSKRLKVSASEESLWSIFCSNDLNISTPLDPHGDPAPSFKRAYQLWRESFRMYPWNLVKRVRLCWDNLKQWLTLNFPEAKATLRKGVTEDDLQEFETSLKVKLPLPTRLLYRFVDGQE 146
The following BLAST results are available for this feature:
BLAST of DN620913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SKI16_ARATH1.177e-5164.38F-box protein SKIP16 OS=Arabidopsis thaliana GN=SK... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_05P19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0005P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620913 ID=DN620913; Name=DN620913; organism=Citrus sinensis; type=EST; length=468bp
CCCTAAAAAAATAAAAATTATGGGTTTGGAGATTGTTGGCGATTTGGCTT
TGAACGTAATACTATCAGGGCTGGGGCCAAAAGACACGGCCAAAGTGGCA
TGTCTCAGCAAAAGATTTAAGGCTGCTGCCTCTGAAGAGTGTCTCTGGTC
CAAATTTTGCTCCGATGATCTTGATCTTGCCTCCCCTCTTGACCCTCTTG
GAAACCCTGCTCCTTCTTTCAAGGCAGCTTATCAGATATGGCGGGAAGCT
TTTGGCATGTATCCATGGCCTCTTGTCAAACGAGTTAAAAGATGTTGGGA
TAGACTTAAAAACTGGTTGGCGGAAAATTTCCCAGAGGCTAAGGCTACTC
TTCGAAAGGGTGCATCAGAAGCAGATATTCAACAGCTGGAAAAAAGTTTG
AAAGTTAAGCTGCCCGTCCCAACAAGGATTCTCTATCGTTTTTGTGATGG
TCAAGAATGCCAAACTGA
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