DN620884

Overview
NameDN620884
Unique NameDN620884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620884 vs. ExPASy Swiss-Prot
Match: CUL3A_XENLA (Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 7.205e-38
Identity = 88/155 (56.77%), Postives = 112/155 (72.26%), Query Frame = -2
Query:  120 NSIDRLSYKEIEQATEIPAPELKRCLQSLACVKG-KHVFWKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVA-QREFEPENQETRQRVGEDRKPQIEAAIVRIMKARRVLDPNNIVTEVPKQLQFRFLPNPVVIKKRIESLIEREFLERDKVD 578
            N+ D+ +++EI+Q T+IP  EL R LQSLAC K  + V  KEP SK+I     F  ND+FTSK  +VKI TV A Q E +PE +ETRQ+V +DRK +IEAAIVRIMK+R+ +  N +V EV +QL+ RFLP+PVVIKKRIE LIERE+L R   D
Sbjct:  606 NNRDKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPED 760          
BLAST of DN620884 vs. ExPASy Swiss-Prot
Match: CUL3_XENTR (Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.096e-37
Identity = 87/155 (56.13%), Postives = 112/155 (72.26%), Query Frame = -2
Query:  120 NSIDRLSYKEIEQATEIPAPELKRCLQSLACVKG-KHVFWKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVA-QREFEPENQETRQRVGEDRKPQIEAAIVRIMKARRVLDPNNIVTEVPKQLQFRFLPNPVVIKKRIESLIEREFLERDKVD 578
            N+ ++ +++EI+Q T+IP  EL R LQSLAC K  + V  KEP SK+I     F  ND+FTSK  +VKI TV A Q E +PE +ETRQ+V +DRK +IEAAIVRIMK+R+ +  N +V EV +QL+ RFLP+PVVIKKRIE LIERE+L R   D
Sbjct:  606 NNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPED 760          
BLAST of DN620884 vs. ExPASy Swiss-Prot
Match: CUL3_MOUSE (Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.096e-37
Identity = 87/155 (56.13%), Postives = 112/155 (72.26%), Query Frame = -2
Query:  120 NSIDRLSYKEIEQATEIPAPELKRCLQSLACVKG-KHVFWKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVA-QREFEPENQETRQRVGEDRKPQIEAAIVRIMKARRVLDPNNIVTEVPKQLQFRFLPNPVVIKKRIESLIEREFLERDKVD 578
            N+ ++ +++EI+Q T+IP  EL R LQSLAC K  + V  KEP SK+I     F  ND+FTSK  +VKI TV A Q E +PE +ETRQ+V +DRK +IEAAIVRIMK+R+ +  N +V EV +QL+ RFLP+PVVIKKRIE LIERE+L R   D
Sbjct:  606 NNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIESGHIFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPED 760          
BLAST of DN620884 vs. ExPASy Swiss-Prot
Match: CUL3_HUMAN (Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.096e-37
Identity = 87/155 (56.13%), Postives = 112/155 (72.26%), Query Frame = -2
Query:  120 NSIDRLSYKEIEQATEIPAPELKRCLQSLACVKG-KHVFWKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVA-QREFEPENQETRQRVGEDRKPQIEAAIVRIMKARRVLDPNNIVTEVPKQLQFRFLPNPVVIKKRIESLIEREFLERDKVD 578
            N+ ++ +++EI+Q T+IP  EL R LQSLAC K  + V  KEP SK+I     F  ND+FTSK  +VKI TV A Q E +PE +ETRQ+V +DRK +IEAAIVRIMK+R+ +  N +V EV +QL+ RFLP+PVVIKKRIE LIERE+L R   D
Sbjct:  606 NNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIENGHIFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPED 760          
BLAST of DN620884 vs. ExPASy Swiss-Prot
Match: CUL3B_XENLA (Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.096e-37
Identity = 87/155 (56.13%), Postives = 112/155 (72.26%), Query Frame = -2
Query:  120 NSIDRLSYKEIEQATEIPAPELKRCLQSLACVKG-KHVFWKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVA-QREFEPENQETRQRVGEDRKPQIEAAIVRIMKARRVLDPNNIVTEVPKQLQFRFLPNPVVIKKRIESLIEREFLERDKVD 578
            N+ ++ +++EI+Q T+IP  EL R LQSLAC K  + V  KEP SK+I     F  ND+FTSK  +VKI TV A Q E +PE +ETRQ+V +DRK +IEAAIVRIMK+R+ +  N +V EV +QL+ RFLP+PVVIKKRIE LIERE+L R   D
Sbjct:  606 NNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPED 760          
BLAST of DN620884 vs. ExPASy Swiss-Prot
Match: CUL3_CAEEL (Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.031e-32
Identity = 76/155 (49.03%), Postives = 108/155 (69.68%), Query Frame = -2
Query:  120 NSIDRLSYKEIEQATEIPAPELKRCLQSLACVKG-KHVFWKEPMSKDIAE-DDAFFFNDKFTSKFVKVKIGTVVAQREFEPENQETRQRVGEDRKPQIEAAIVRIMKARRVLDPNNIVTEVPKQLQFRFLPNPVVIKKRIESLIEREFLERDKVD 578
            N  +R+S +++    +IP  ELKR LQSLA  K  + +  ++   KD  +  D F  ND F SK  +VK+  V  + E EPE +ETRQ+V +DRK ++EAAIVRIMKAR+ L+ NN+V EV +QL+ RF+P+P++IK+RIE+LIERE+L RD+ D
Sbjct:  615 NHHNRISCQQLMDELKIPERELKRNLQSLALGKASQRILVRKNKGKDAIDMSDEFAVNDNFQSKLTRVKVQMVTGKVESEPEIRETRQKVEDDRKLEVEAAIVRIMKARKKLNHNNLVAEVTQQLRHRFMPSPIIIKQRIETLIEREYLARDEHD 769          
BLAST of DN620884 vs. ExPASy Swiss-Prot
Match: CUL3_DICDI (Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.908e-32
Identity = 86/186 (46.24%), Postives = 108/186 (58.06%), Query Frame = -2
Query:  120 NSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVFWKEPM---------------------------------SKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQREFEPENQETRQRVGEDRKPQIEAAIVRIMKARRVLDPNNIVTEVPKQLQFRFLPNPVVIKKRIESLIEREFLERDKVD 578
            N   +L++KEI   T IP  +LKR L +L   K K +  + P                                  SK I E D F FN KF SK  +VK+  VV Q+E   E +ETR +V EDRK QIEA+IVRIMKAR+ L+ +N+V+EV KQLQ RF+PNPV++KKRIESLIERE+LER K D
Sbjct:  577 NDQSKLTFKEIADQTGIPTIDLKRNLLALTNPKNKILDRELPSTTSSTTTTTTTATSSSTSTSPSSSSSSISTPTPSKSIDESDVFAFNTKFKSKLFRVKVMAVV-QKETPVEEKETRDKVDEDRKHQIEASIVRIMKARKTLEHSNLVSEVIKQLQSRFVPNPVIVKKRIESLIEREYLERSKQD 761          
BLAST of DN620884 vs. ExPASy Swiss-Prot
Match: CUL3_SCHPO (Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.779e-28
Identity = 66/145 (45.52%), Postives = 97/145 (66.90%), Query Frame = -2
Query:  132 LSYKEIEQATEIPAPELKRCLQSLACVKGKHVFWKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQR-EFEPENQETRQRVGEDRKPQIEAAIVRIMKARRVLDPNNIVTEVPKQLQFRFLPNPVVIKKRIESLIEREFLER 563
            L ++EI + T I   +LKR LQSLAC K K +  K+P  +++   D F+FN+ F S   ++KI TV   R E + E + T ++V E RK Q +A IVR+MK R+V + N ++ EV +QL  RF P+P++IK+RIE+LIERE+L+R
Sbjct:  630 LIFEEILEKTNIEVGDLKRNLQSLACAKYK-ILLKDPKGREVNAGDKFYFNENFVSNLARIKISTVAQTRVEDDSERKRTLEKVDESRKHQADACIVRVMKDRKVCEHNQLMAEVTRQLNPRFHPSPMMIKRRIEALIEREYLQR 773          
BLAST of DN620884 vs. ExPASy Swiss-Prot
Match: CUL4B_HUMAN (Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 7.474e-27
Identity = 72/151 (47.68%), Postives = 95/151 (62.91%), Query Frame = -2
Query:  126 NSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVFWKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQREFEPENQETRQRVGEDRKPQIEAAIVRIMKARRVLDPNNIVTEVPKQLQFRFLPNPVVIKKRIESLIEREFLERDK 578
            N  +  S +EI+QAT I   EL+R LQSLAC K + V  K P  KDI + D F  ND F  K  ++KI  +  +   E E   T +RV +DR+ QI+AAIVRIMK R+ L  N +V+EV  QL+F     P  +KKRIESLI+R+++ERDK
Sbjct:  739 NEGEEFSLEEIKQATGIEDGELRRTLQSLACGKAR-VLAKNPKGKDIEDGDKFICNDDFKHKLFRIKINQIQMKETVE-EQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPV--KPADLKKRIESLIDRDYMERDK 885          
BLAST of DN620884 vs. ExPASy Swiss-Prot
Match: CUL4A_HUMAN (Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3)

HSP 1 Score: 118.242 bits (295), Expect = 2.840e-26
Identity = 69/151 (45.70%), Postives = 96/151 (63.58%), Query Frame = -2
Query:  126 NSIDRLSYKEIEQATEIPAPELKRCLQSLACVKGKHVFWKEPMSKDIAEDDAFFFNDKFTSKFVKVKIGTVVAQREFEPENQETRQRVGEDRKPQIEAAIVRIMKARRVLDPNNIVTEVPKQLQFRFLPNPVVIKKRIESLIEREFLERDK 578
            N  D  S++EI+ AT I   EL+R LQSLAC K + V  K P  K++ + D F FN +F  K  ++KI  +  +   E E   T +RV +DR+ QI+AAIVRIMK R+ L  N +V+E+  QL+F   P    +KKRIESLI+R+++ERDK
Sbjct:  603 NEGDGFSFEEIKMATGIEDSELRRTLQSLACGKAR-VLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVE-EQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGD--LKKRIESLIDRDYMERDK 749          
The following BLAST results are available for this feature:
BLAST of DN620884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
CUL3A_XENLA7.205e-3856.77Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1[more]
CUL3_XENTR2.096e-3756.13Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1[more]
CUL3_MOUSE2.096e-3756.13Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1[more]
CUL3_HUMAN2.096e-3756.13Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2[more]
CUL3B_XENLA2.096e-3756.13Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1[more]
CUL3_CAEEL2.031e-3249.03Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 S... [more]
CUL3_DICDI5.908e-3246.24Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 ... [more]
CUL3_SCHPO1.779e-2845.52Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1... [more]
CUL4B_HUMAN7.474e-2747.68Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3[more]
CUL4A_HUMAN2.840e-2645.70Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_05P03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0005P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620884 ID=DN620884; Name=DN620884; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTTTTTTTTTTTTCTTACAAAGGGAGGATAAAATTCCAAAACCCCG
TTAAAAAGCCCTGAAAGTGACACAACTAACAATTTTTTTCTTTCAAGCAA
GGTATCGGTACAATTTCCTGTCCACTTTGTCCCTCTCTAAAAACTCCCTT
TCGATTAGGGACTCTATTCTTTTTTTAATTACAACTGGATTCGGCAAAAA
CCGAAATTGCAGCTGCTTTGGGACTTCAGTAACAATGTTATTGGGATCCA
GCACCCGTCTTGCCTTCATGATCCTTACAATCGCTGCCTCTATCTGGGGT
TTCCTGTCTTCCCCCACTCTTTGTCGGGTTTCCTGATTTTCCGGTTCAAA
CTCTCTTTGGGCAACCACTGTACCTATCTTAACCTTAACAAACTTGCTTG
TGAACTTGTCGTTAAAAAAAAAGGCATCATCTTCAGCTATGTCTTTGCTC
ATGGGTTCCTTCCAAAAAACATGCTTACCCTTGACACAGGCCAGCGACTG
CAGGCACCTCTTCAATTCTGGGGCAGGTATTTCTGTGGCCTGCTCAATTT
CTTTGTAACTCAACCGATCAATGCTATTG
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