FC922048

Overview
NameFC922048
Unique NameFC922048
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length172
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8110 contig Csv1_Contig8110:773..944. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC922048 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.244e-18
Identity = 40/56 (71.43%), Postives = 51/56 (91.07%), Query Frame = 3
Query:    3 SPSKKSEAIERLGADSFLVSRDQDEMQAAMGTMDGIIDPISAVHPLMPLIGLLKSQ 170
            SP+KK EA+ RLGADSF+VSR+ ++MQ+AMGT+DGIID +SA HPL+PL+GLLKSQ
Sbjct:  217 SPNKKDEAVNRLGADSFVVSREPEQMQSAMGTLDGIIDTVSAAHPLLPLLGLLKSQ 272          
BLAST of FC922048 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.077e-17
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 3
Query:    3 SPSKKSEAIERLGADSFLVSRDQDEMQAAMGTMDGIIDPISAVHPLMPLIGLLKS 167
            SP K+ EA++ LGADSFLVSRDQD+MQAA+GTMDGIID +SA HPL+PLIGLL S
Sbjct:  214 SPKKEEEALKHLGADSFLVSRDQDQMQAAIGTMDGIIDTVSAQHPLLPLIGLLNS 268          
BLAST of FC922048 vs. ExPASy Swiss-Prot
Match: MTDH_MEDSA (Probable mannitol dehydrogenase OS=Medicago sativa GN=CAD1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.719e-15
Identity = 39/54 (72.22%), Postives = 49/54 (90.74%), Query Frame = 3
Query:    3 SPSKKSEAIERLGADSFLVSRDQDEMQAAMGTMDGIIDPISAVHPLMPLIGLLK 164
            SP+K++EAI++LGADSFLVS+D ++M+AAMGTMD IID ISA H LMPL+GLLK
Sbjct:  215 SPNKETEAIDKLGADSFLVSKDPEKMKAAMGTMDYIIDTISAAHSLMPLLGLLK 268          
BLAST of FC922048 vs. ExPASy Swiss-Prot
Match: MTDH_PETCR (Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.001e-15
Identity = 37/54 (68.52%), Postives = 46/54 (85.19%), Query Frame = 3
Query:    3 SPSKKSEAIERLGADSFLVSRDQDEMQAAMGTMDGIIDPISAVHPLMPLIGLLK 164
            S SKK EA+E+LGAD FLVS D D+MQAA GT+ GIID +SA+HP++PL+GLLK
Sbjct:  193 SESKKQEALEKLGADEFLVSSDSDQMQAATGTLHGIIDTVSALHPVVPLLGLLK 246          
BLAST of FC922048 vs. ExPASy Swiss-Prot
Match: CADH7_ARATH (Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.001e-15
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 3
Query:    3 SPSKKSEAIERLGADSFLVSRDQDEMQAAMGTMDGIIDPISAVHPLMPLIGLLKSQ 170
            S  K+ EA+ RLGAD+FLVSRD  +M+ AMGTMDGIID +SA HPL+PL+GLLK++
Sbjct:  212 SERKRDEAVTRLGADAFLVSRDPKQMKDAMGTMDGIIDTVSATHPLLPLLGLLKNK 267          
BLAST of FC922048 vs. ExPASy Swiss-Prot
Match: MTDH3_STYHU (Probable mannitol dehydrogenase 3 OS=Stylosanthes humilis GN=CAD3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.234e-14
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 3
Query:    6 PSKKSEAIERLGADSFLVSRDQDEMQAAMGTMDGIIDPISAVHPLMPLIGLLKS 167
            P+KK EAI+ LGADSFLVSRD D+M+A   T+DGIID +SA H ++PLIGLLKS
Sbjct:  219 PTKKEEAIKNLGADSFLVSRDPDQMEAPKETLDGIIDTVSADHSIVPLIGLLKS 272          
BLAST of FC922048 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.432e-14
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 3
Query:    3 SPSKKSEAIERLGADSFLVSRDQDEMQAAMGTMDGIIDPISAVHPLMPLIGLLK 164
            S  K+ EAI RLGAD+FLVSRD  +++ AMGTMDGIID +SA H L+PL+GLLK
Sbjct:  212 SEKKRDEAINRLGADAFLVSRDPKQIKDAMGTMDGIIDTVSATHSLLPLLGLLK 265          
BLAST of FC922048 vs. ExPASy Swiss-Prot
Match: CADH6_ARATH (Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.609e-13
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 3
Query:   12 KKSEAIERLGADSFLVSRDQDEMQAAMGTMDGIIDPISAVHPLMPLIGLLKS 167
            K  +A++ LGAD FLVS D+D+M+AAMGTMDGIID +SA H + PLIGLLKS
Sbjct:  220 KSKDALDTLGADGFLVSTDEDQMKAAMGTMDGIIDTVSASHSISPLIGLLKS 271          
BLAST of FC922048 vs. ExPASy Swiss-Prot
Match: CAD8A_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8A OS=Oryza sativa subsp. japonica GN=CAD8A PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.609e-13
Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 3
Query:    3 SPSKKSEAIERLGADSFLVSRDQDEMQAAMGTMDGIIDPISAVHPLMPLIGLLK 164
            SP+K+ EA+ERLGAD+FL SRD + M AA  TMDGIID +SA HPL+PL+ LLK
Sbjct:  211 SPAKREEALERLGADAFLSSRDGEGMAAAAATMDGIIDTVSAGHPLVPLLSLLK 264          
BLAST of FC922048 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.101e-13
Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = 3
Query:    3 SPSKKSEAIERLGADSFLVSRDQDEMQAAMGTMDGIIDPISAVHPLMPLIGLLK 164
            SP K+ EA+ERLGAD+F+VS++ DEM AA GTMDGII+ +SA  P+ PL+GLLK
Sbjct:  209 SPGKRQEALERLGADAFVVSKNADEMNAATGTMDGIINTVSANIPIAPLLGLLK 262          
The following BLAST results are available for this feature:
BLAST of FC922048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
MTDH_MESCR8.244e-1871.43Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]
MTDH_FRAAN1.077e-1776.36Probable mannitol dehydrogenase OS=Fragaria ananas... [more]
MTDH_MEDSA1.719e-1572.22Probable mannitol dehydrogenase OS=Medicago sativa... [more]
MTDH_PETCR5.001e-1568.52Mannitol dehydrogenase (Fragment) OS=Petroselinum ... [more]
CADH7_ARATH5.001e-1566.07Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis th... [more]
MTDH3_STYHU4.234e-1468.52Probable mannitol dehydrogenase 3 OS=Stylosanthes ... [more]
CADH8_ARATH9.432e-1466.67Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th... [more]
CADH6_ARATH1.609e-1367.31Probable cinnamyl alcohol dehydrogenase 6 OS=Arabi... [more]
CAD8A_ORYSJ1.609e-1366.67Probable cinnamyl alcohol dehydrogenase 8A OS=Oryz... [more]
CADH5_ORYSJ2.101e-1364.81Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionC06056H11T7 RindPdigS Citrus sinensis cDNA clone C06056H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922048 ID=FC922048; Name=FC922048; organism=Citrus sinensis; type=EST; length=172bp
CCTCCCCTAGCAAGAAGAGTGAAGCCATTGAACGTCTTGGCGCCGATTCC
TTTTTGGTCAGTCGTGATCAAGATGAGATGCAGGCTGCCATGGGCACAAT
GGATGGTATTATCGACCCAATATCTGCAGTTCACCCTCTAATGCCGTTGA
TTGGACTGTTGAAATCTCAAGG
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