DN620399

Overview
NameDN620399
Unique NameDN620399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN620399 vs. ExPASy Swiss-Prot
Match: Y1689_ARATH (Uncharacterized membrane protein At1g06890 OS=Arabidopsis thaliana GN=At1g06890 PE=1 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 1.031e-61
Identity = 125/192 (65.10%), Postives = 129/192 (67.19%), Query Frame = 3 
Query:  237 MSEGQKFQLGTVGAXXXXXXXXXXXXXCNKALISSLGFTFATTLTSWHLLVTFCSLHVALWMKLFEHKPFDPRAVMGFXXXXXXXXXXXXXXXXXXXXXFYQMTKLAIIPCTILLETLFFRKKFSRNIQLSXXXXXXXXXXATVTDXXXXXXXXXXXXXXXXTTCVAQIMTNTIQKKF*VSSTQLLYQSCPY 812
            MSEGQKFQLGT+GA             CNKALIS+LGFTFATTLTSWHLLVTFCSLHVALWMK+FEHKPFDPRAVMGF                     FYQMTKLAIIPCT+LLETLFFRKKFSR IQ S          ATVTD                TTCVAQIMTNTIQKKF VSSTQLLYQSCPY
Sbjct:    1 MSEGQKFQLGTIGALSLSVVSSVSIVICNKALISTLGFTFATTLTSWHLLVTFCSLHVALWMKMFEHKPFDPRAVMGFGILNGISIGLLNLSLGFNSVGFYQMTKLAIIPCTVLLETLFFRKKFSRKIQFSLTILLLGVGIATVTDLQLNMLGSVLSLLAVVTTCVAQIMTNTIQKKFKVSSTQLLYQSCPY 192
The following BLAST results are available for this feature:
BLAST of DN620399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1689_ARATH1.031e-6165.10Uncharacterized membrane protein At1g06890 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_05E09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0005E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620399 ID=DN620399; Name=DN620399; organism=Citrus sinensis; type=EST; length=814bp
TTTTTATATGCTTTCGTTCTTCTCTGTTTCTCTCAGCATCAAACGAAACA
GTGGAGGCTTTCTTCTTATAAGAAGTAAAACAAACAAGCAGCATAATCCC
TATAAATTTTTTTCTTTTTATTTTAATAATTAAAAAGTTCAGCTTGTTCG
GCTGCTGGTTGCTTTGCTGAAATTTTTTGACAAATTATGATTTAAAATAA
TATCGGGATCAAAGTGGAAGAGAGGCGAAGAAGAAGATGAGTGAAGGGCA
GAAGTTCCAGTTAGGAACAGTTGGGGCATTGAGTTTGTCGGTGATTTCAT
CAGTGTCTATTGTGATTTGCAACAAGGCGCTTATTAGCTCACTTGGATTC
ACTTTTGCCACAACTTTGACAAGCTGGCATCTTCTTGTTACTTTTTGTTC
GCTTCATGTGGCATTATGGATGAAATTATTTGAGCACAAGCCTTTTGATC
CAAGAGCTGTAATGGGATTTGGGGTATTGAATGGGATATCTATTGGGCTG
TTGAATCTTAGCTTGGGTTTCAATTCTGTTGGTTTCTACCAGATGACGAA
ACTTGCAATCATCCCCTGCACCATTCTTTTGGAGACTCTTTTCTTCAGGA
AGAAATTCAGTAGGAATATCCAACTTTCATTAGTCATCCTTCTTGTGGGT
GTGGGAATTGCAACTGTAACTGATCTTCAGCTCAATGTTTTGGGTTCTGT
CTTGTCGCTGCTTGCAGTTCTTACAACTTGTGTTGCTCAGATTATGACCA
ATACCATCCAGAAGAAGTTCTAAGTTTCTTCAACCCAACTGCTGTATCAG
TCGTGCCCCTATCA
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