EY680254
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY680254 vs. ExPASy Swiss-Prot
Match: CPSF3_MOUSE (Cleavage and polyadenylation specificity factor subunit 3 OS=Mus musculus GN=Cpsf3 PE=1 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 1.002e-59 Identity = 111/203 (54.68%), Postives = 140/203 (68.97%), Query Frame = 1 Query: 40 SREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGPCPGCCHVYG*HCWCPSTPPGNYSPGEEPTLRAAELPQFSPEILIIRIPLG 648 + E DQL I PLGAG EVGRSC+ + ++G+ I+ DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E D+ SMD+IE ++FH+ EV GIKFWCY AG G G++S E+ L AAE+P P+ILII G Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYG 208
BLAST of EY680254 vs. ExPASy Swiss-Prot
Match: CPSF3_HUMAN (Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens GN=CPSF3 PE=1 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 1.002e-59 Identity = 111/203 (54.68%), Postives = 140/203 (68.97%), Query Frame = 1 Query: 40 SREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGPCPGCCHVYG*HCWCPSTPPGNYSPGEEPTLRAAELPQFSPEILIIRIPLG 648 + E DQL I PLGAG EVGRSC+ + ++G+ I+ DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E D+ SMD+IE ++FH+ EV GIKFWCY AG G G++S E+ L AAE+P P+ILII G Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYG 208
BLAST of EY680254 vs. ExPASy Swiss-Prot
Match: CPSF3_BOVIN (Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus GN=CPSF3 PE=2 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 1.002e-59 Identity = 111/203 (54.68%), Postives = 140/203 (68.97%), Query Frame = 1 Query: 40 SREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGPCPGCCHVYG*HCWCPSTPPGNYSPGEEPTLRAAELPQFSPEILIIRIPLG 648 + E DQL I PLGAG EVGRSC+ + ++G+ I+ DCGIHP GM ALPY D IDP+ ID+LLI+HFHLDH +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E D+ SMD+IE ++FH+ EV GIKFWCY AG G G++S E+ L AAE+P P+ILII G Sbjct: 6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYG 208
BLAST of EY680254 vs. ExPASy Swiss-Prot
Match: YSH1_SCHPO (Endoribonuclease ysh1 OS=Schizosaccharomyces pombe GN=ysh1 PE=2 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 1.037e-56 Identity = 108/199 (54.27%), Postives = 137/199 (68.84%), Query Frame = 1 Query: 52 DQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGPCPGCCHVYG*HCWCPSTPPGNYSPGEEPTLRAAELPQFSPEILIIRIPLG 648 D L I LGAGNEVGRSC + Y+GKT++ D G+HPAY+G++ALP+FDE D S +DVLLI+HFHLDH ASLPY ++KT F GRVFMTH TKA+ K LL+DYVKVS V +ED L+DE+D+ + DRIE +D+H T+EV GIKF Y AG G C + G+YS E+ L AE+P P++LI G Sbjct: 35 DLLEFINLGAGNEVGRSCHVIQYKGKTVMLDAGVHPAYTGLSALPFFDEFDLSTVDVLLISHFHLDHVASLPYVMQKTNFRGRVFMTHPTKAVCKWLLSDYVKVSNVGMEDQLYDEKDLLAAFDRIEAVDYHSTIEVEGIKFTPYHAGHVLGACMYFVEMAGVNILFTGDYSREEDRHLHVAEVPPKRPDVLITESTYG 233
BLAST of EY680254 vs. ExPASy Swiss-Prot
Match: CPSF3_DICDI (Cleavage and polyadenylation specificity factor subunit 3 OS=Dictyostelium discoideum GN=cpsf3 PE=3 SV=1) HSP 1 Score: 202.601 bits (514), Expect = 2.238e-51 Identity = 104/214 (48.60%), Postives = 143/214 (66.82%), Query Frame = 1 Query: 16 LKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSA--IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS-VEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGPCPGCCHVYG*HCWCPSTPPGNYSPGEEPTLRAAELPQFSPEILIIRIPLG 648 LKR + + D L I P+G+G+EVGRSCV + Y+GK ++FDCG+HPAYSG+ +LP+FD I+ ID+LL++HFHLDHAA++PYF+ KT F GRVFMTH TKAIY +LL+DYVKVS ++ +DMLFD+ D++RS+++IE + + Q VE NGIK C+ AG G G++S E+ L AE P ++LII G Sbjct: 22 LKRPLKGGTEDDDILEITPIGSGSEVGRSCVLLKYKGKKVMFDCGVHPAYSGLVSLPFFDSIESDIPDIDLLLVSHFHLDHAAAVPYFVGKTKFKGRVFMTHPTKAIYGMLLSDYVKVSNITRDDDMLFDKSDLDRSLEKIEKVRYRQKVEHNGIKVTCFNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMGAETPPVKVDVLIIESTYG 235
BLAST of EY680254 vs. ExPASy Swiss-Prot
Match: YSH1_YARLI (Endoribonuclease YSH1 OS=Yarrowia lipolytica GN=YSH1 PE=3 SV=2) HSP 1 Score: 197.978 bits (502), Expect = 5.513e-50 Identity = 100/208 (48.08%), Postives = 136/208 (65.38%), Query Frame = 1 Query: 46 EGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGPCPGCCHVYG*HCWCPSTP------PGNYSPGEEPTLRAAELPQFSPEILIIRIPLG 648 + D + + LG G EVGRSC +S++GKTI+ D G+HPA+SG+A+LP++DE D S ID+LLI+HFHLDHAASLPY ++KT F GRVFMTH TK IY+ LL+D+V+V+ + D L+ E D+ S ++IE +D+H T+EVNG+KF Y AG HV G + G+YS E+ L AE+P P+ILI G Sbjct: 33 DSDTFSFVALGGGREVGRSCHVISFKGKTIMLDAGVHPAHSGLASLPFYDEFDLSTIDILLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKGIYRWLLSDFVRVTSGAESDPDLYSEADLTASFNKIETIDYHSTMEVNGVKFTAYHAG------HVLGAAMYTIEVGGVKVLFTGDYSREEDRHLNQAEVPPMKPDILICESTYG 234
BLAST of EY680254 vs. ExPASy Swiss-Prot
Match: YSH1_KLULA (Endoribonuclease YSH1 OS=Kluyveromyces lactis GN=YSH1 PE=3 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 1.604e-49 Identity = 99/206 (48.06%), Postives = 132/206 (64.08%), Query Frame = 1 Query: 52 DQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV-------SVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGPCPGCCHVYG*HCWCPSTPPGNYSPGEEPTLRAAELPQFSPEILIIRIPLG 648 D L LG NEVGRSC + Y+GKT++ D GIHPA+ G+A+LPY+DE D S ID+LLI+HFHLDHAASLPY +++T F GRVFMTH TKAIY+ LL D+VKV+ + S D L+ ++D+ S DRIE +D+H T+EVNGIKF + AG G G+YS + L +AE+P S +++I+ G Sbjct: 12 DHLRFFSLGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFDLSTIDLLLISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSNDNLYSDEDLAESFDRIETIDYHSTMEVNGIKFTAFHAGHVLGAAMFQIEIAGVRVLFTGDYSREVDRHLNSAEVPPQSSDVIIVESTFG 217
BLAST of EY680254 vs. ExPASy Swiss-Prot
Match: YSH1_CANGA (Endoribonuclease YSH1 OS=Candida glabrata GN=YSH1 PE=3 SV=1) HSP 1 Score: 193.356 bits (490), Expect = 1.358e-48 Identity = 97/210 (46.19%), Postives = 132/210 (62.86%), Query Frame = 1 Query: 37 VSREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV------SVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGPCPGCCHVYG*HCWCPSTPPGNYSPGEEPTLRAAELPQFSPEILIIRIPLG 648 V +Q LG GNEVGRSC + ++GKTI+ D GIHPAY GMA+LP++D+ D S +DVLLI+HFHLDHAASLPY ++KT F GRVFMTH TKAIY+ LL D+V+V+ + + +D L+ +D+ S D+IE +D+H ++VNGIKF + AG G G+YS + L +AE+P +ILI+ G Sbjct: 3 VKERSNQFRFFSLGGGNEVGRSCHIIQFKGKTIMLDAGIHPAYQGMASLPFYDDFDLSIVDVLLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRWLLRDFVRVTSIGSQSSNAEDDNLYSNEDLIESFDKIETIDYHSMIDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREIDRHLNSAEVPPLPSDILIVESTFG 212
BLAST of EY680254 vs. ExPASy Swiss-Prot
Match: YSH1_YEAST (Endoribonuclease YSH1 OS=Saccharomyces cerevisiae GN=YSH1 PE=1 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 1.501e-47 Identity = 94/200 (47.00%), Postives = 130/200 (65.00%), Query Frame = 1 Query: 73 LGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV--------SVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGPCPGCCHVYG*HCWCPSTPPGNYSPGEEPTLRAAELPQFSPEILIIRIPLG 648 LG NEVGRSC + Y+GKT++ D GIHPAY G+A+LP++DE D S +D+LLI+HFHLDHAASLPY +++T F GRVFMTH TKAIY+ LL D+V+V+ + + ++ LF ++D+ S D+IE +D+H TV+VNGIKF + AG G G+YS + L +AE+P S +LI+ G Sbjct: 14 LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLSKVDILLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDLVDSFDKIETVDYHSTVDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFG 213
BLAST of EY680254 vs. ExPASy Swiss-Prot
Match: YSH1_USTMA (Endoribonuclease YSH1 OS=Ustilago maydis GN=YSH1 PE=3 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 1.961e-47 Identity = 97/203 (47.78%), Postives = 132/203 (65.02%), Query Frame = 1 Query: 52 DQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEV-NGIKFWCYTAGPCPGCCHVYG*HCWCPSTPPGNYSPGEEPTLRAAELPQFSPEILIIRIPLG 648 DQLTI LGAG EVGRSC + YRGKTI+ D G+HPA++G+AALP+ DE+D S +D +LITHFHLDHAA+L Y +EKT F G+V+MTH TKA+Y+ L++D+V++S +D LFDE ++ S +IE +DFHQ V + G++F Y AG G C G++S E+ L AE+P P++LI G Sbjct: 22 DQLTIEMLGAGQEVGRSCCVLKYRGKTIVCDTGVHPAFTGIAALPFIDELDWSTVDAILITHFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDFVRISNAGNDDNLFDENEMLASWRQIEAVDFHQDVSIAGGLRFTSYHAGHVLGACMFLIEIAGLRILYTGDFSREEDRHLVQAEIPPVKPDVLICESTYG 224 The following BLAST results are available for this feature:
BLAST of EY680254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
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Sequences
The
following sequences are available for this feature:
EST sequence >EY680254 ID=EY680254; Name=EY680254; organism=Citrus sinensis; type=EST; length=829bpback to top |