EY680254

Overview
NameEY680254
Unique NameEY680254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680254 vs. ExPASy Swiss-Prot
Match: CPSF3_MOUSE (Cleavage and polyadenylation specificity factor subunit 3 OS=Mus musculus GN=Cpsf3 PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.002e-59
Identity = 111/203 (54.68%), Postives = 140/203 (68.97%), Query Frame = 1
Query:   40 SREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGPCPGCCHVYG*HCWCPSTPPGNYSPGEEPTLRAAELPQFSPEILIIRIPLG 648
            + E DQL I PLGAG EVGRSC+ + ++G+ I+ DCGIHP   GM ALPY D IDP+ ID+LLI+HFHLDH  +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E D+  SMD+IE ++FH+  EV GIKFWCY AG   G                G++S  E+  L AAE+P   P+ILII    G
Sbjct:    6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYG 208          
BLAST of EY680254 vs. ExPASy Swiss-Prot
Match: CPSF3_HUMAN (Cleavage and polyadenylation specificity factor subunit 3 OS=Homo sapiens GN=CPSF3 PE=1 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.002e-59
Identity = 111/203 (54.68%), Postives = 140/203 (68.97%), Query Frame = 1
Query:   40 SREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGPCPGCCHVYG*HCWCPSTPPGNYSPGEEPTLRAAELPQFSPEILIIRIPLG 648
            + E DQL I PLGAG EVGRSC+ + ++G+ I+ DCGIHP   GM ALPY D IDP+ ID+LLI+HFHLDH  +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E D+  SMD+IE ++FH+  EV GIKFWCY AG   G                G++S  E+  L AAE+P   P+ILII    G
Sbjct:    6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYG 208          
BLAST of EY680254 vs. ExPASy Swiss-Prot
Match: CPSF3_BOVIN (Cleavage and polyadenylation specificity factor subunit 3 OS=Bos taurus GN=CPSF3 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.002e-59
Identity = 111/203 (54.68%), Postives = 140/203 (68.97%), Query Frame = 1
Query:   40 SREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGPCPGCCHVYG*HCWCPSTPPGNYSPGEEPTLRAAELPQFSPEILIIRIPLG 648
            + E DQL I PLGAG EVGRSC+ + ++G+ I+ DCGIHP   GM ALPY D IDP+ ID+LLI+HFHLDH  +LP+FL+KT+F GR FMTHATKAIY+ LL+DYVKVS +S +DML+ E D+  SMD+IE ++FH+  EV GIKFWCY AG   G                G++S  E+  L AAE+P   P+ILII    G
Sbjct:    6 AEESDQLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIESTYG 208          
BLAST of EY680254 vs. ExPASy Swiss-Prot
Match: YSH1_SCHPO (Endoribonuclease ysh1 OS=Schizosaccharomyces pombe GN=ysh1 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 1.037e-56
Identity = 108/199 (54.27%), Postives = 137/199 (68.84%), Query Frame = 1
Query:   52 DQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGPCPGCCHVYG*HCWCPSTPPGNYSPGEEPTLRAAELPQFSPEILIIRIPLG 648
            D L  I LGAGNEVGRSC  + Y+GKT++ D G+HPAY+G++ALP+FDE D S +DVLLI+HFHLDH ASLPY ++KT F GRVFMTH TKA+ K LL+DYVKVS V +ED L+DE+D+  + DRIE +D+H T+EV GIKF  Y AG   G C  +           G+YS  E+  L  AE+P   P++LI     G
Sbjct:   35 DLLEFINLGAGNEVGRSCHVIQYKGKTVMLDAGVHPAYTGLSALPFFDEFDLSTVDVLLISHFHLDHVASLPYVMQKTNFRGRVFMTHPTKAVCKWLLSDYVKVSNVGMEDQLYDEKDLLAAFDRIEAVDYHSTIEVEGIKFTPYHAGHVLGACMYFVEMAGVNILFTGDYSREEDRHLHVAEVPPKRPDVLITESTYG 233          
BLAST of EY680254 vs. ExPASy Swiss-Prot
Match: CPSF3_DICDI (Cleavage and polyadenylation specificity factor subunit 3 OS=Dictyostelium discoideum GN=cpsf3 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.238e-51
Identity = 104/214 (48.60%), Postives = 143/214 (66.82%), Query Frame = 1
Query:   16 LKRRDVPVSREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSA--IDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVS-VEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGPCPGCCHVYG*HCWCPSTPPGNYSPGEEPTLRAAELPQFSPEILIIRIPLG 648
            LKR     + + D L I P+G+G+EVGRSCV + Y+GK ++FDCG+HPAYSG+ +LP+FD I+     ID+LL++HFHLDHAA++PYF+ KT F GRVFMTH TKAIY +LL+DYVKVS ++  +DMLFD+ D++RS+++IE + + Q VE NGIK  C+ AG   G                G++S  E+  L  AE P    ++LII    G
Sbjct:   22 LKRPLKGGTEDDDILEITPIGSGSEVGRSCVLLKYKGKKVMFDCGVHPAYSGLVSLPFFDSIESDIPDIDLLLVSHFHLDHAAAVPYFVGKTKFKGRVFMTHPTKAIYGMLLSDYVKVSNITRDDDMLFDKSDLDRSLEKIEKVRYRQKVEHNGIKVTCFNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLMGAETPPVKVDVLIIESTYG 235          
BLAST of EY680254 vs. ExPASy Swiss-Prot
Match: YSH1_YARLI (Endoribonuclease YSH1 OS=Yarrowia lipolytica GN=YSH1 PE=3 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 5.513e-50
Identity = 100/208 (48.08%), Postives = 136/208 (65.38%), Query Frame = 1
Query:   46 EGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKVSVEDM-LFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGPCPGCCHVYG*HCWCPSTP------PGNYSPGEEPTLRAAELPQFSPEILIIRIPLG 648
            + D  + + LG G EVGRSC  +S++GKTI+ D G+HPA+SG+A+LP++DE D S ID+LLI+HFHLDHAASLPY ++KT F GRVFMTH TK IY+ LL+D+V+V+  +  D  L+ E D+  S ++IE +D+H T+EVNG+KF  Y AG      HV G   +            G+YS  E+  L  AE+P   P+ILI     G
Sbjct:   33 DSDTFSFVALGGGREVGRSCHVISFKGKTIMLDAGVHPAHSGLASLPFYDEFDLSTIDILLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKGIYRWLLSDFVRVTSGAESDPDLYSEADLTASFNKIETIDYHSTMEVNGVKFTAYHAG------HVLGAAMYTIEVGGVKVLFTGDYSREEDRHLNQAEVPPMKPDILICESTYG 234          
BLAST of EY680254 vs. ExPASy Swiss-Prot
Match: YSH1_KLULA (Endoribonuclease YSH1 OS=Kluyveromyces lactis GN=YSH1 PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.604e-49
Identity = 99/206 (48.06%), Postives = 132/206 (64.08%), Query Frame = 1
Query:   52 DQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV-------SVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGPCPGCCHVYG*HCWCPSTPPGNYSPGEEPTLRAAELPQFSPEILIIRIPLG 648
            D L    LG  NEVGRSC  + Y+GKT++ D GIHPA+ G+A+LPY+DE D S ID+LLI+HFHLDHAASLPY +++T F GRVFMTH TKAIY+ LL D+VKV+ +       S  D L+ ++D+  S DRIE +D+H T+EVNGIKF  + AG   G                G+YS   +  L +AE+P  S +++I+    G
Sbjct:   12 DHLRFFSLGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFDLSTIDLLLISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSNDNLYSDEDLAESFDRIETIDYHSTMEVNGIKFTAFHAGHVLGAAMFQIEIAGVRVLFTGDYSREVDRHLNSAEVPPQSSDVIIVESTFG 217          
BLAST of EY680254 vs. ExPASy Swiss-Prot
Match: YSH1_CANGA (Endoribonuclease YSH1 OS=Candida glabrata GN=YSH1 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.358e-48
Identity = 97/210 (46.19%), Postives = 132/210 (62.86%), Query Frame = 1
Query:   37 VSREGDQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV------SVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGPCPGCCHVYG*HCWCPSTPPGNYSPGEEPTLRAAELPQFSPEILIIRIPLG 648
            V    +Q     LG GNEVGRSC  + ++GKTI+ D GIHPAY GMA+LP++D+ D S +DVLLI+HFHLDHAASLPY ++KT F GRVFMTH TKAIY+ LL D+V+V+ +      + +D L+  +D+  S D+IE +D+H  ++VNGIKF  + AG   G                G+YS   +  L +AE+P    +ILI+    G
Sbjct:    3 VKERSNQFRFFSLGGGNEVGRSCHIIQFKGKTIMLDAGIHPAYQGMASLPFYDDFDLSIVDVLLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRWLLRDFVRVTSIGSQSSNAEDDNLYSNEDLIESFDKIETIDYHSMIDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREIDRHLNSAEVPPLPSDILIVESTFG 212          
BLAST of EY680254 vs. ExPASy Swiss-Prot
Match: YSH1_YEAST (Endoribonuclease YSH1 OS=Saccharomyces cerevisiae GN=YSH1 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.501e-47
Identity = 94/200 (47.00%), Postives = 130/200 (65.00%), Query Frame = 1
Query:   73 LGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFSGRVFMTHATKAIYKLLLTDYVKVSKV--------SVEDMLFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGPCPGCCHVYG*HCWCPSTPPGNYSPGEEPTLRAAELPQFSPEILIIRIPLG 648
            LG  NEVGRSC  + Y+GKT++ D GIHPAY G+A+LP++DE D S +D+LLI+HFHLDHAASLPY +++T F GRVFMTH TKAIY+ LL D+V+V+ +        + ++ LF ++D+  S D+IE +D+H TV+VNGIKF  + AG   G                G+YS   +  L +AE+P  S  +LI+    G
Sbjct:   14 LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLSKVDILLISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDLVDSFDKIETVDYHSTVDVNGIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIVESTFG 213          
BLAST of EY680254 vs. ExPASy Swiss-Prot
Match: YSH1_USTMA (Endoribonuclease YSH1 OS=Ustilago maydis GN=YSH1 PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.961e-47
Identity = 97/203 (47.78%), Postives = 132/203 (65.02%), Query Frame = 1
Query:   52 DQLTIIPLGAGNEVGRSCVYMSYRGKTILFDCGIHPAYSGMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTF---SGRVFMTHATKAIYKLLLTDYVKVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTVEV-NGIKFWCYTAGPCPGCCHVYG*HCWCPSTPPGNYSPGEEPTLRAAELPQFSPEILIIRIPLG 648
            DQLTI  LGAG EVGRSC  + YRGKTI+ D G+HPA++G+AALP+ DE+D S +D +LITHFHLDHAA+L Y +EKT F    G+V+MTH TKA+Y+ L++D+V++S    +D LFDE ++  S  +IE +DFHQ V +  G++F  Y AG   G C              G++S  E+  L  AE+P   P++LI     G
Sbjct:   22 DQLTIEMLGAGQEVGRSCCVLKYRGKTIVCDTGVHPAFTGIAALPFIDELDWSTVDAILITHFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDFVRISNAGNDDNLFDENEMLASWRQIEAVDFHQDVSIAGGLRFTSYHAGHVLGACMFLIEIAGLRILYTGDFSREEDRHLVQAEIPPVKPDVLICESTYG 224          
The following BLAST results are available for this feature:
BLAST of EY680254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
CPSF3_MOUSE1.002e-5954.68Cleavage and polyadenylation specificity factor su... [more]
CPSF3_HUMAN1.002e-5954.68Cleavage and polyadenylation specificity factor su... [more]
CPSF3_BOVIN1.002e-5954.68Cleavage and polyadenylation specificity factor su... [more]
YSH1_SCHPO1.037e-5654.27Endoribonuclease ysh1 OS=Schizosaccharomyces pombe... [more]
CPSF3_DICDI2.238e-5148.60Cleavage and polyadenylation specificity factor su... [more]
YSH1_YARLI5.513e-5048.08Endoribonuclease YSH1 OS=Yarrowia lipolytica GN=YS... [more]
YSH1_KLULA1.604e-4948.06Endoribonuclease YSH1 OS=Kluyveromyces lactis GN=Y... [more]
YSH1_CANGA1.358e-4846.19Endoribonuclease YSH1 OS=Candida glabrata GN=YSH1 ... [more]
YSH1_YEAST1.501e-4747.00Endoribonuclease YSH1 OS=Saccharomyces cerevisiae ... [more]
YSH1_USTMA1.961e-4747.78Endoribonuclease YSH1 OS=Ustilago maydis GN=YSH1 P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-009-B01-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680254 ID=EY680254; Name=EY680254; organism=Citrus sinensis; type=EST; length=829bp
GGGCAACCGCCGTCACTAAAAAGACGGGACGTGCCGGTATCAAGAGAAGG
TGACCAACTTACAATAATCCCACTAGGAGCTGGCAATGAAGTGGGAAGAT
CCTGTGTGTACATGTCCTATAGAGGGAAAACTATTTTGTTTGACTGTGGA
ATTCATCCCGCTTACTCGGGTATGGCTGCATTGCCTTACTTCGATGAGAT
TGATCCTTCAGCAATTGATGTCCTTCTTATCACACACTTTCATTTGGATC
ATGCTGCATCCCTACCTTATTTTCTGGAGAAGACTACATTCAGTGGCAGG
GTATTTATGACTCATGCTACAAAGGCTATTTACAAGTTGCTTTTGACTGA
TTATGTAAAAGTGAGCAAAGTTTCAGTTGAAGATATGTTGTTCGATGAAC
AAGACATTAATCGCTCCATGGATAGAATTGAGGTTCTTGATTTCCATCAG
ACAGTGGAAGTGAATGGCATTAAATTCTGGTGTTATACCGCTGGCCCATG
TCCTGGGTGCTGCCATGTTTATGGTTGACATTGCTGGTGTCCAAGTACTC
CACCTGGAAATTATTCTCCTGGAGAAGAACCAACTCTCCGTGCTGCTGAG
CTTCCCCAGTTCTCTCCCGAAATTTTGATAATCCGAATCCCCTTAGGGGG
TACACCTTTCACCAACCCGGCCACAATCGGTGGAAGGCCCTTCGCGGGAG
GTATTGACACCAATAATTCCACCGAGAGGACCCAGCTCAGCATACACGCA
AAAGAACCAGACGCCGCCCCCCGCCGCCCCCGGCCACACCACCTGAACAA
AAACCGCCCGCCACCCCCGCACGAGCGCC
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