FC922029

Overview
NameFC922029
Unique NameFC922029
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length373
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12302 contig Csv1_Contig12302:1193..1565. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC922029 vs. ExPASy Swiss-Prot
Match: C72A1_CATRO (Secologanin synthase OS=Catharanthus roseus GN=CYP72A1 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.578e-37
Identity = 64/123 (52.03%), Postives = 97/123 (78.86%), Query Frame = 1
Query:    1 LRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKDQVSYFPFASGPRICVGQNFALVEAKMATAMILQNYSFELSPSYVHAPTAVPTLHPE 369
            LRLYPP+  L++ V K+TKLG+ T+PAG Q+ LP +++H++  +WG+DA+EF P RF +G++ A K+ V+Y PF+ GPR+C+GQNFAL++AK+  AMILQ + F+++PSYVHAP  + T+ P+
Sbjct:  390 LRLYPPVIDLTKIVHKDTKLGSYTIPAGTQVMLPTVMLHREKSIWGEDAMEFNPMRFVDGVANATKNNVTYLPFSWGPRVCLGQNFALLQAKLGLAMILQRFKFDVAPSYVHAPFTILTVQPQ 512          
BLAST of FC922029 vs. ExPASy Swiss-Prot
Match: C13A7_CAEEL (Putative cytochrome P450 CYP13A7 OS=Caenorhabditis elegans GN=cyp-13A7 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.798e-18
Identity = 47/112 (41.96%), Postives = 66/112 (58.93%), Query Frame = 1
Query:    1 LRLYPPLTAL-SRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKDQVSYFPFASGPRICVGQNFALVEAKMATAMILQNYSFELSPSYV 333
            LRLYP  + + +R  LK T +  + + AG  I +    +H DP++WGDD  EFKPER+  G  +    +  Y PF  GPRIC+G   A++E KM    IL+NY+FE +P  V
Sbjct:  384 LRLYPLASLVHNRKCLKTTNVLGMEIEAGTNINVDTWSLHHDPKVWGDDVNEFKPERWESG-DELFFAKGGYLPFGMGPRICIGMRLAMMEMKMLLTNILKNYTFETTPETV 494          
BLAST of FC922029 vs. ExPASy Swiss-Prot
Match: CP3AT_PIG (Cytochrome P450 3A29 OS=Sus scrofa GN=CYP3A29 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.654e-18
Identity = 45/108 (41.67%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    1 LRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKDQVS---YFPFASGPRICVGQNFALVEAKMATAMILQNYSFE 315
            LRLYP    L RA  K+ ++  + +P G  + +P+ ++H+DP+LW +   EF+PERF    SK  KD ++   Y PF +GPR C+G  FAL+  K+A   +LQN+SF+
Sbjct:  364 LRLYPIAARLERACKKDVEIHGVFVPKGTVVVVPVFVLHRDPDLWPEPE-EFRPERF----SKKHKDTINPYTYLPFGTGPRNCIGMRFALMNMKLALVRVLQNFSFK 466          
BLAST of FC922029 vs. ExPASy Swiss-Prot
Match: CP3AO_SHEEP (Cytochrome P450 3A24 OS=Ovis aries GN=CYP3A24 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.814e-17
Identity = 41/108 (37.96%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    1 LRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKDQVS---YFPFASGPRICVGQNFALVEAKMATAMILQNYSFE 315
            LR++P    L R   K+ ++  +++P G  + +P+ ++H+DP+LW +   EF+PERF    SK  KD ++   Y PF +GPR C+G  FA++  K+A   +LQN+SF+
Sbjct:  364 LRMFPIAVRLDRLCKKDVEIHGVSIPKGTAVTVPIFVLHRDPQLWPEPE-EFRPERF----SKKNKDSINPYVYLPFGTGPRNCIGMRFAIMNMKLAIVRVLQNFSFK 466          
BLAST of FC922029 vs. ExPASy Swiss-Prot
Match: CP3AS_BOVIN (Cytochrome P450 3A28 OS=Bos taurus GN=CYP3A28 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.040e-17
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 1
Query:    1 LRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKDQVS---YFPFASGPRICVGQNFALVEAKMATAMILQNYSFE 315
            LR++P    L R   K+ ++  +T+P G  + +P+ ++H +PELW +   EF+PERF    SK  KD ++   Y PF +GPR C+G  FA++  K+A   ILQN+SF+
Sbjct:  364 LRMFPIAGRLERVCKKDVEIHGVTIPKGTTVLVPLFVLHNNPELWPEPE-EFRPERF----SKNNKDSINPYVYLPFGTGPRNCLGMRFAIMNIKLALVRILQNFSFK 466          
BLAST of FC922029 vs. ExPASy Swiss-Prot
Match: C13A6_CAEEL (Putative cytochrome P450 CYP13A6 OS=Caenorhabditis elegans GN=cyp-13A6 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.040e-17
Identity = 42/105 (40.00%), Postives = 61/105 (58.10%), Query Frame = 1
Query:    1 LRLYP-PLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKDQVSYFPFASGPRICVGQNFALVEAKMATAMILQNYSF 312
            LRLYP   TA +R  ++ET +  +    G+ I +    +H +P +WG+D  +FKPER+  G  +  +   SY PF SGPR C+G   A +E K+  A IL+ YSF
Sbjct:  382 LRLYPLGTTANTRKCMRETTINGVNFDEGMNIQVDTWTLHHNPRIWGEDVEDFKPERWENGACEHLEHNGSYIPFGSGPRQCIGMRLAQMEQKILLAQILKEYSF 486          
BLAST of FC922029 vs. ExPASy Swiss-Prot
Match: C13A1_CAEEL (Putative cytochrome P450 CYP13A1 OS=Caenorhabditis elegans GN=cyp-13A1 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.040e-17
Identity = 44/106 (41.51%), Postives = 60/106 (56.60%), Query Frame = 1
Query:    1 LRLYP-PLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKDQVSYFPFASGPRICVGQNFALVEAKMATAMILQNYSFE 315
            LRLYP    A SR  ++ TKLGN+ +  G  I +    +H DP +WGDDA +FKPER+    S     +  Y PF  GPR C+G   A +E K+    IL+ ++FE
Sbjct:  384 LRLYPLGAFANSRRCMRNTKLGNMKVEVGTMIQVDTWTLHTDPNIWGDDAEDFKPERWQTPNSDQIYQKSGYIPFGLGPRQCIGMRLAYMEEKILLVHILRKFTFE 489          
BLAST of FC922029 vs. ExPASy Swiss-Prot
Match: CP3AG_MOUSE (Cytochrome P450 3A16 OS=Mus musculus GN=Cyp3a16 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.277e-17
Identity = 41/105 (39.05%), Postives = 64/105 (60.95%), Query Frame = 1
Query:    1 LRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKDQVSYFPFASGPRICVGQNFALVEAKMATAMILQNYSFE 315
            LRLYP    L R   K+ ++  + +P G  + +P  ++H DP+ W +   EF+PERF++  +K + D   Y PF +GPR C+G  FAL+  K+A   +LQN+SF+
Sbjct:  365 LRLYPITNRLQRVCKKDVEINGIYIPKGSTVIIPSYVLHHDPQHWPEPE-EFQPERFSKE-NKGSIDPYVYLPFGNGPRNCIGMRFALMNMKLALIKVLQNFSFQ 467          
BLAST of FC922029 vs. ExPASy Swiss-Prot
Match: CP3AB_MOUSE (Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.277e-17
Identity = 42/105 (40.00%), Postives = 63/105 (60.00%), Query Frame = 1
Query:    1 LRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKDQVSYFPFASGPRICVGQNFALVEAKMATAMILQNYSFE 315
            LRLYP    L R   K+ +L  + +P G  + +P   +H DP+ W +   EF+PERF++  +K + D   Y PF +GPR C+G  FAL+  K+A   I+QN+SF+
Sbjct:  365 LRLYPIANRLERVCKKDVELNGVYIPKGSTVMIPSYALHHDPQHWSEPE-EFQPERFSKE-NKGSIDPYVYLPFGNGPRNCLGMRFALMNMKLALTKIMQNFSFQ 467          
BLAST of FC922029 vs. ExPASy Swiss-Prot
Match: CP3AR_ONCMY (Cytochrome P450 3A27 OS=Oncorhynchus mykiss GN=cyp3a27 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.892e-17
Identity = 42/106 (39.62%), Postives = 64/106 (60.38%), Query Frame = 1
Query:    1 LRLYPPLTALSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKDQVSYFPFASGPRICVGQNFALVEAKMATAMILQNYSFEL 318
            LRLYP    L R   K  ++  + +P    + +P   +H+DPE+W D   EFKPERF++  +K + D  +Y PF +GPR C+G  FAL+  K+A   ILQ+++F +
Sbjct:  369 LRLYPIAPRLERVAKKTVEINGIVIPKDCIVLVPTWTLHRDPEIWSDPE-EFKPERFSKE-NKESIDPYTYMPFGAGPRNCIGMRFALIMIKLAMVEILQSFTFSV 472          
The following BLAST results are available for this feature:
BLAST of FC922029 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 116
Match NameE-valueIdentityDescription
C72A1_CATRO1.578e-3752.03Secologanin synthase OS=Catharanthus roseus GN=CYP... [more]
C13A7_CAEEL2.798e-1841.96Putative cytochrome P450 CYP13A7 OS=Caenorhabditis... [more]
CP3AT_PIG3.654e-1841.67Cytochrome P450 3A29 OS=Sus scrofa GN=CYP3A29 PE=2... [more]
CP3AO_SHEEP1.814e-1737.96Cytochrome P450 3A24 OS=Ovis aries GN=CYP3A24 PE=2... [more]
CP3AS_BOVIN4.040e-1739.81Cytochrome P450 3A28 OS=Bos taurus GN=CYP3A28 PE=2... [more]
C13A6_CAEEL4.040e-1740.00Putative cytochrome P450 CYP13A6 OS=Caenorhabditis... [more]
C13A1_CAEEL4.040e-1741.51Putative cytochrome P450 CYP13A1 OS=Caenorhabditis... [more]
CP3AG_MOUSE5.277e-1739.05Cytochrome P450 3A16 OS=Mus musculus GN=Cyp3a16 PE... [more]
CP3AB_MOUSE5.277e-1740.00Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE... [more]
CP3AR_ONCMY6.892e-1739.62Cytochrome P450 3A27 OS=Oncorhynchus mykiss GN=cyp... [more]

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Properties
Property NameValue
Genbank descriptionC06056G04T7 RindPdigS Citrus sinensis cDNA clone C06056G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922029 ID=FC922029; Name=FC922029; organism=Citrus sinensis; type=EST; length=373bp
CTCAGGCTTTATCCGCCCTTAACTGCGCTTAGTCGAGCTGTTCTTAAGGA
GACGAAACTCGGAAACTTGACATTACCCGCTGGGGTTCAAATTGGCTTGC
CAATGATCCTAGTTCACCAGGATCCTGAACTTTGGGGTGACGATGCAGTT
GAGTTTAAGCCGGAAAGGTTTGCGGAAGGAATTTCAAAGGCGGCAAAAGA
TCAAGTTTCATATTTCCCATTCGCATCGGGTCCTAGGATATGTGTTGGAC
AAAATTTTGCTCTAGTAGAAGCAAAAATGGCCACGGCAATGATTCTTCAA
AACTACTCATTCGAGTTGTCTCCATCCTATGTCCATGCTCCAACGGCGGT
TCCAACCCTTCATCCGGAACTGG
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