FC922026

Overview
NameFC922026
Unique NameFC922026
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC922026_ssr300 microsatellite FC922026_ssr300:300..311. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13556 contig Csv1_Contig13556:1..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC922026 vs. ExPASy Swiss-Prot
Match: FTSH8_ORYSJ (Cell division protease ftsH homolog 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 8.153e-50
Identity = 97/109 (88.99%), Postives = 105/109 (96.33%), Query Frame = 1
Query:  433 RGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAADQVLLGKISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSFPQREDTFEMSKPYSNQTGAIIDAEVRERVGK 759
            RGTAALGFAQYVPNENLL+TKEQLFDMTCMTLGGRAA++VL+G+ISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSFPQR+D FEM+KPYSNQT +IID EVRE VGK
Sbjct:  625 RGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEEVLIGRISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSFPQRDDGFEMTKPYSNQTASIIDDEVREWVGK 733          
BLAST of FC922026 vs. ExPASy Swiss-Prot
Match: FTSH3_ORYSJ (Cell division protease ftsH homolog 3, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH3 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.816e-49
Identity = 97/109 (88.99%), Postives = 104/109 (95.41%), Query Frame = 1
Query:  433 RGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAADQVLLGKISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSFPQREDTFEMSKPYSNQTGAIIDAEVRERVGK 759
            RGTAALGFAQYVPN+NLL+TKEQLFDMTCMTLGGRAA++VL+GKISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSFPQRED FEMSKPYS+QT +IID EVRE V K
Sbjct:  610 RGTAALGFAQYVPNDNLLMTKEQLFDMTCMTLGGRAAEEVLIGKISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSFPQREDGFEMSKPYSSQTASIIDTEVREWVAK 718          
BLAST of FC922026 vs. ExPASy Swiss-Prot
Match: FTSHA_ARATH (Cell division protease ftsH homolog 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.425e-48
Identity = 96/109 (88.07%), Postives = 104/109 (95.41%), Query Frame = 1
Query:  433 RGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAADQVLLGKISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSFPQREDTFEMSKPYSNQTGAIIDAEVRERVGK 759
            RGTAALGFAQYVPNENLL+TKEQLFDMTCMTLGGRAA+QVL+G+ISTGAQNDLEKVTKMTYAQVAVYGFS+K+GLLSFPQRED  E SKPYSN+TGA+ID EVRE VGK
Sbjct:  617 RGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLIGRISTGAQNDLEKVTKMTYAQVAVYGFSDKIGLLSFPQRED--EFSKPYSNRTGAMIDEEVREWVGK 723          
BLAST of FC922026 vs. ExPASy Swiss-Prot
Match: FTSH3_ARATH (Cell division protease ftsH homolog 3, mitochondrial OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.425e-48
Identity = 94/109 (86.24%), Postives = 103/109 (94.50%), Query Frame = 1
Query:  433 RGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAADQVLLGKISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSFPQREDTFEMSKPYSNQTGAIIDAEVRERVGK 759
            RGTAALGFAQYVPNENLL+TKEQLFDMTCMTLGGRAA+QVL+GKISTGAQNDLEKVTKMTYAQVAVYGFS+KVGLLSFP R+D ++ SKPYSN+TGAIID EVR+ V K
Sbjct:  611 RGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLIGKISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSFPPRDDGYDFSKPYSNKTGAIIDEEVRDWVAK 719          
BLAST of FC922026 vs. ExPASy Swiss-Prot
Match: AFG32_HUMAN (AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.022e-24
Identity = 56/107 (52.34%), Postives = 74/107 (69.16%), Query Frame = 1
Query:  427 RGRGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAADQVLLGKISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSFP-QREDTFEMSKPYSNQTGAIIDAEVR 744
            RG+G   LG+AQY+P E  L TKEQL D  CMTLGGR ++++  G+I+TGAQ+DL KVT+  YAQ+  +G +EKVG +SF   R+    + KPYS  T  +ID EVR
Sbjct:  599 RGKG---LGYAQYLPKEQYLYTKEQLLDRMCMTLGGRVSEEIFFGRITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQGDMVLEKPYSEATARLIDDEVR 702          
BLAST of FC922026 vs. ExPASy Swiss-Prot
Match: AFG31_MOUSE (AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.022e-24
Identity = 58/108 (53.70%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  427 RGRGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAADQVLLGKISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLS--FPQREDTFEMSKPYSNQTGAIIDAEVR 744
            RG+G   LG+AQY+P E  L T+EQLFD  CM LGGR A+Q+  G+I+TGAQ+DL KVT+  YAQ+  +G SEK+G +S  FP++ +T  + KPYS  T  +ID EVR
Sbjct:  591 RGKG---LGYAQYLPREQFLYTREQLFDRMCMMLGGRVAEQLFFGQITTGAQDDLRKVTQSAYAQIVQFGMSEKLGQVSFDFPRQGETM-VEKPYSEATAQLIDEEVR 694          
BLAST of FC922026 vs. ExPASy Swiss-Prot
Match: AFG32_MOUSE (AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.641e-24
Identity = 56/107 (52.34%), Postives = 74/107 (69.16%), Query Frame = 1
Query:  427 RGRGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAADQVLLGKISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSFP-QREDTFEMSKPYSNQTGAIIDAEVR 744
            RG+G   LG+AQY+P E  L TKEQL D  CMTLGGR ++++  G+I+TGAQ+DL KVT+  YAQ+  +G +EKVG +SF   R+    + KPYS  T  +ID EVR
Sbjct:  598 RGKG---LGYAQYLPKEQYLYTKEQLLDRMCMTLGGRVSEEIFFGRITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQGDMVLEKPYSEATARMIDDEVR 701          
BLAST of FC922026 vs. ExPASy Swiss-Prot
Match: AFG32_BOVIN (AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.505e-24
Identity = 55/107 (51.40%), Postives = 74/107 (69.16%), Query Frame = 1
Query:  427 RGRGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAADQVLLGKISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSFP-QREDTFEMSKPYSNQTGAIIDAEVR 744
            RG+G   LG+AQY+P E  L T+EQL D  CMTLGGR ++++  G+I+TGAQ+DL KVT+  YAQ+  +G +EKVG +SF   R+    + KPYS  T  +ID EVR
Sbjct:  600 RGKG---LGYAQYLPREQYLYTREQLLDRMCMTLGGRVSEEIFFGRITTGAQDDLRKVTQSAYAQIVQFGMNEKVGQISFDLPRQGDMVLEKPYSEATARLIDDEVR 703          
BLAST of FC922026 vs. ExPASy Swiss-Prot
Match: RCA1_YEAST (Mitochondrial respiratory chain complexes assembly protein RCA1 OS=Saccharomyces cerevisiae GN=RCA1 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.500e-19
Identity = 45/103 (43.69%), Postives = 75/103 (72.82%), Query Frame = 1
Query:  433 RGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAADQVLLGKISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSFPQREDTFEMSKPYSNQTGAIIDAEV 741
            RG  ALG+AQY+P +  LLT++QL D   M+LGGR ++++    +++GA +D +KVT M  A V   G S+K+G +++ +R+D+ +++KP+S++TG IID+EV
Sbjct:  638 RGQGALGYAQYLPGDIFLLTEQQLKDRMTMSLGGRVSEELHFPSVTSGASDDFKKVTSMATAMVTELGMSDKIGWVNYQKRDDS-DLTKPFSDETGDIIDSEV 739          
BLAST of FC922026 vs. ExPASy Swiss-Prot
Match: AFG3_YEAST (Mitochondrial respiratory chain complexes assembly protein AFG3 OS=Saccharomyces cerevisiae GN=AFG3 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.699e-19
Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 1
Query:  433 RGTAALGFAQYVPNENLLLTKEQLFDMTCMTLGGRAADQVLLGKISTGAQNDLEKVTKMTYAQVAVYGFSEKVGLLSFPQREDTFEMSKPYSNQTGAIIDAEVRERV 753
            RG  ALG+AQY+P +  L+++EQ      M LGGR ++++    +++GA +D +KVT+M  A V   G S K+G LSF Q +  F+++KP+SN+T   ID EV+  V
Sbjct:  583 RGQGALGYAQYLPPDQYLISEEQFRHRMIMALGGRVSEELHFPSVTSGAHDDFKKVTQMANAMVTSLGMSPKIGYLSFDQNDGNFKVNKPFSNKTARTIDLEVKSIV 689          
The following BLAST results are available for this feature:
BLAST of FC922026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FTSH8_ORYSJ8.153e-5088.99Cell division protease ftsH homolog 8, mitochondri... [more]
FTSH3_ORYSJ1.816e-4988.99Cell division protease ftsH homolog 3, mitochondri... [more]
FTSHA_ARATH3.425e-4888.07Cell division protease ftsH homolog 10, mitochondr... [more]
FTSH3_ARATH3.425e-4886.24Cell division protease ftsH homolog 3, mitochondri... [more]
AFG32_HUMAN2.022e-2452.34AFG3-like protein 2 OS=Homo sapiens GN=AFG3L2 PE=1... [more]
AFG31_MOUSE2.022e-2453.70AFG3-like protein 1 OS=Mus musculus GN=Afg3l1 PE=2... [more]
AFG32_MOUSE2.641e-2452.34AFG3-like protein 2 OS=Mus musculus GN=Afg3l2 PE=1... [more]
AFG32_BOVIN4.505e-2451.40AFG3-like protein 2 OS=Bos taurus GN=AFG3L2 PE=2 S... [more]
RCA1_YEAST1.500e-1943.69Mitochondrial respiratory chain complexes assembly... [more]
AFG3_YEAST5.699e-1942.06Mitochondrial respiratory chain complexes assembly... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC06056G01T7 RindPdigS Citrus sinensis cDNA clone C06056G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922026 ID=FC922026; Name=FC922026; organism=Citrus sinensis; type=EST; length=759bp
CTTCCACTTTGCGTAAATATGATGTTACTGGGTTTCGGAGGCGCTGTAGT
TGCTGGGGCAACTTCAACTTTGATGATAAGCAAGCTTGTTACTATAATTG
GGCACATCATACTTGCTCTCATGATGTGGCTTCGATCTCGAAAAGTTGAT
CTCGATAATTTTGATTCACAATTTGGTTTTTACATGTTCCTTTGGCAGTT
AAATTATGTTGAATACATCCTTATCCATTTTCTACGCTGAGAACTGAGAA
GGAAACAACCGTTCAAATTCACGGAACAAATAACAAGAGGCAGTGTTCTC
TACCTACCTACTTATAATTGTTTTGTTGTGTATGTGTTTACATATGTTAT
ATTGTTGAGCATTTTAATAATGAGTCATGAGGGTATACTTGTAGCCACTA
GTACCTCGGCCGCGACCACGCTTGGTCGCGGCCGAGGTACAGCTGCACTT
GGATTTGCCCAGTATGTCCCTAACGAGAACCTTCTTCTGACAAAGGAGCA
GCTTTTTGATATGACGTGTATGACCCTTGGCGGTCGAGCAGCTGACCAGG
TTTTGTTGGGGAAGATATCTACTGGAGCTCAAAATGACTTGGAGAAGGTA
ACAAAGATGACCTATGCCCAAGTTGCCGTGTATGGTTTTAGCGAAAAGGT
TGGTCTCTTGTCTTTCCCACAAAGAGAAGACACTTTCGAAATGAGTAAGC
CATACAGTAACCAGACTGGGGCAATCATAGATGCCGAGGTTCGAGAAAGG
GTAGGCAAG
back to top