DN620304

Overview
NameDN620304
Unique NameDN620304
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620304 vs. ExPASy Swiss-Prot
Match: RLC1_CITLI ((R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1)

HSP 1 Score: 353.214 bits (905), Expect = 9.680e-97
Identity = 173/177 (97.74%), Postives = 174/177 (98.31%), Query Frame = -2
Query:  272 TPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKKVNAYTADKDSPLTRTTAEFLLNLVRMSHFMYLHGDGHGVQNQETIDVGFTLLFQPIPLEDKDMAFTASPGTKG 802
            TPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAR+HIKDMMRQMWKKVNAYTADKDSPLT TT EFLLNLVRMSHFMYLHGDGHGVQNQETIDVGFTLLFQPIPLEDK MAFTASPGTKG
Sbjct:  430 TPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVARQHIKDMMRQMWKKVNAYTADKDSPLTGTTTEFLLNLVRMSHFMYLHGDGHGVQNQETIDVGFTLLFQPIPLEDKHMAFTASPGTKG 606          
BLAST of DN620304 vs. ExPASy Swiss-Prot
Match: MYRS_QUEIL (Myrcene synthase, chloroplastic OS=Quercus ilex PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.613e-43
Identity = 89/161 (55.28%), Postives = 113/161 (70.19%), Query Frame = -2
Query:  317 PKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKKVNAYTADKDSPLTRTTAEFLLNLVRMSHFMYLHGDGHGVQNQETIDVGFTLLFQPIPL 799
            P L+EY+EN  +SI  P I+  +Y   TNPI K+ L+ LE  P+I+ WSS I RL DDLGTS+DE++RGDVPK+IQCYM+ETGASEE ARE+IK ++   WKK+N   A   SP +    E  LNL RM+  +Y HGDGHG+ N+ET D   +LL QPIPL
Sbjct:  435 PSLQEYIENAWISIGAPTILVHAYFFVTNPITKEALDCLEEYPNIIRWSSIIARLADDLGTSTDELKRGDVPKAIQCYMNETGASEEGAREYIKYLISATWKKMNKDRA-ASSPFSHIFIEIALNLARMAQCLYQHGDGHGLGNRETKDRILSLLIQPIPL 594          
BLAST of DN620304 vs. ExPASy Swiss-Prot
Match: TPS1_CANSA ((-)-limonene synthase, chloroplastic OS=Cannabis sativa GN=TPS1 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.277e-36
Identity = 77/162 (47.53%), Postives = 110/162 (67.90%), Query Frame = -2
Query:  317 PKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFL-ESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKKVNAYTADKDSPLTRTTAEFLLNLVRMSHFMYLHGDGHGVQNQETIDVGFTLLFQPIPL 799
            P L+EY+ENG +S+ G +I+  +Y + TNP+ K+ LE L + +P+IV  +S I RL DDLGT SDE++RGDVPKSIQCYMH+TGASE+ AREHIK ++ + WK++N    + +S  +    +   NL R S F+Y +GDGH  QN  + +    L+  PIP+
Sbjct:  461 PTLQEYVENGWLSVGGQVILMHAYFAFTNPVTKEALECLKDGHPNIVRHASIILRLADDLGTLSDELKRGDVPKSIQCYMHDTGASEDEAREHIKYLISESWKEMNNEDGNINSFFSNEFVQVCQNLGRASQFIYQYGDGHASQNNLSKERVLGLIITPIPM 622          
BLAST of DN620304 vs. ExPASy Swiss-Prot
Match: SSS_SALOF ((+)-sabinene synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.065e-34
Identity = 75/158 (47.47%), Postives = 98/158 (62.03%), Query Frame = -2
Query:  326 PKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKKVNAYTADKDSPLTRTTAEFLLNLVRMSHFMYLHGDGHGVQNQETIDVGFTLLFQP 799
            P LEEYL N  +SI+ P II+  Y +  N I +  +E L    +I++ S  I RL DDLGTS  E++RGDVPK+IQCYM++T ASE  A EH+K ++R+ WK++N  T   D P T        NL R + F+YL GDGHGVQ+ E       LLFQP
Sbjct:  431 PSLEEYLNNAKISISAPTIISQLYFTLANSIDETAIESLYQYHNILYLSGTILRLADDLGTSQHELERGDVPKAIQCYMNDTNASEREAVEHVKFLIREAWKEMNTVTTASDCPFTDDLVAAAANLARAAQFIYLDGDGHGVQHSEIHQQMGGLLFQP 588          
BLAST of DN620304 vs. ExPASy Swiss-Prot
Match: CINS_ARATH (1,8-cineole synthase, chloroplastic OS=Arabidopsis thaliana GN=TPS27 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 4.143e-31
Identity = 77/166 (46.39%), Postives = 103/166 (62.05%), Query Frame = -2
Query:  314 PKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPD-IVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKKVNA--YTADKDSPLTRTTAEFLLNLVRMSHFMYLHGDGHGV-QNQETIDVGFTLLFQPIPLE 799
            P LEEY++N  +SI+ P I+   Y   ++ I  + LE L  +   IV  S+ + RL +DLGTS  E+ RGDV KS+QCYMHETGASEE AR+H+  M+  MW  +N+   TA   S  +R   E  +NL RMS  MY +GDGHG  +  +TID   +LL  PIPL+
Sbjct:  430 PSLEEYMQNAWISISAPTILIHFYCVFSDQISVQNLETLSQHRQHIVRCSATVLRLANDLGTSPTELARGDVLKSVQCYMHETGASEERARDHVHQMISDMWDDMNSETKTACNSSSRSRGFKEAAMNLARMSQCMYQYGDGHGCPEKAKTIDRVQSLLVDPIPLD 595          
BLAST of DN620304 vs. ExPASy Swiss-Prot
Match: TPS2_CANSA ((+)-alpha-pinene synthase, chloroplastic OS=Cannabis sativa PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.067e-31
Identity = 77/165 (46.67%), Postives = 104/165 (63.03%), Query Frame = -2
Query:  317 PKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFL-ESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKKVNAYTADKDSPLTRTTAEFL---LNLVRMSHFMYLHGDGHGVQNQETIDVGFTLLFQPIPL 799
            P L++Y+EN  +SI G +I   ++ S T  I  + LE L E +       S + RL DDLGT SDE++RGDVPKSIQCYMH+TGASE+ AREHIK ++ ++WK++N    D+D   +  + EF+    NL RMS FMY HGDGH  Q+  +      L+  PIPL
Sbjct:  455 PTLKKYIENASLSIGGQIIFVYAFFSLTKSITNEALESLQEGHHAACRQGSLMLRLADDLGTLSDEMKRGDVPKSIQCYMHDTGASEDEAREHIKFLISEIWKEMN----DEDEYNSIFSKEFVQACKNLGRMSLFMYQHGDGHASQDSHSRKRISDLIINPIPL 615          
BLAST of DN620304 vs. ExPASy Swiss-Prot
Match: MYRS2_ARATH (Myrcene/ocimene synthase 2, chloroplastic OS=Arabidopsis thaliana GN=TPS24 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.067e-31
Identity = 75/167 (44.91%), Postives = 105/167 (62.87%), Query Frame = -2
Query:  314 PKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFL-ESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKKVN--AYTADKDSP-LTRTTAEFLLNLVRMSHFMYLHGDGHGVQNQ-ETIDVGFTLLFQPIPLE 799
            P +EEY++N  +SI+ P ++   Y + +  I  + LE L +   D+V  S+ + RL +DL TS DE+ RGDV KS+QCYMHETG SEE AR H++ M+   W ++N  A TA + S  L+R   E  +NL RMS  MY HGDGHG  ++ + +D   TLL  PIPL+
Sbjct:  432 PSVEEYMQNAWISISAPTMLIHFYCAFSGQISVQILESLVQQQQDVVRCSATVLRLANDLATSPDELARGDVLKSVQCYMHETGVSEEEARTHVQQMISHTWDEMNYEARTAARSSSLLSRRFVETAMNLARMSQCMYQHGDGHGCPDKAKIVDRVQTLLVDPIPLD 598          
BLAST of DN620304 vs. ExPASy Swiss-Prot
Match: MYRS1_ARATH (Myrcene/ocimene synthase 1, chloroplastic OS=Arabidopsis thaliana GN=TPS10 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.983e-30
Identity = 73/165 (44.24%), Postives = 102/165 (61.82%), Query Frame = -2
Query:  314 PKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNP-DIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKKVN-AYTADKDSPLTRTTAEFLLNLVRMSHFMYLHGDGHG-VQNQETIDVGFTLLFQPIPLE 799
            P LEEY++N  +SI+ P I    Y   ++ +  + LE L  +  ++V  SS +FRL +DL TS DE+ RGDV KSIQCYM ETGASE+ AR H++ M+  +W ++N    A   S L     E ++NL RMS  MY +GDGHG  +  + +D   +LLF PIPL+
Sbjct:  427 PNLEEYMQNARISISSPTIFVHFYCVFSDQLSIQVLETLSQHQQNVVRCSSSVFRLANDLVTSPDELARGDVCKSIQCYMSETGASEDKARSHVRQMINDLWDEMNYEKMAHSSSILHHDFMETVINLARMSQCMYQYGDGHGSPEKAKIVDRVMSLLFNPIPLD 591          
BLAST of DN620304 vs. ExPASy Swiss-Prot
Match: BPPS_SALOF ((+)-bornyl diphosphate synthase, chloroplastic OS=Salvia officinalis PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.801e-26
Identity = 69/160 (43.12%), Postives = 94/160 (58.75%), Query Frame = -2
Query:  326 TPKLEEYLENGLVSITGPLIITISYLSGTNPIIKKE-LEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKKVNAYTADKDSPLTRTTAEFLLNLVRMSHFMYLHGDGHGVQNQETIDVGFTLLFQP 802
            TP L+EYL    +S+  P II+ +Y +  N       ++ L    DI+  +  I RL DDLGTS  E+ RGDVPK+IQCYM ET ASEE A EH+K ++R+ WK +N   A    P          N+ R++ F+YLHGDG GVQ+ +T +    LLF+P
Sbjct:  438 TPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIA-AGYPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEP 596          
BLAST of DN620304 vs. ExPASy Swiss-Prot
Match: SCS_SALOF (1,8-cineole synthase, chloroplastic OS=Salvia officinalis PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.168e-25
Identity = 62/145 (42.76%), Postives = 91/145 (62.76%), Query Frame = -2
Query:  368 PKLEEYLENGLVSITGPLIITISYLSGTNPIIKKELEFLESNPDIVHWSSKIFRLQDDLGTSSDEIQRGDVPKSIQCYMHETGASEEVAREHIKDMMRQMWKKVNAYTADKDSPLTRTTAEFLLNLVRMSHFMYLH-GDGHGVQN 799
            P LEEY++N  +SI G  I++  +   T+ I +++ E +    DIV  S  I RL DD+GTS DE++RGDVPKS+QCYM+E  ASEE AREH++ ++ Q WK +N       S  ++   +   NL RM+ ++Y H  DG G+Q+
Sbjct:  433 PSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEDAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMNKEM--MTSSFSKYFVQVSANLARMAQWIYQHESDGFGMQH 575          
The following BLAST results are available for this feature:
BLAST of DN620304 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RLC1_CITLI9.680e-9797.74(R)-limonene synthase 1 OS=Citrus limon PE=2 SV=1[more]
MYRS_QUEIL3.613e-4355.28Myrcene synthase, chloroplastic OS=Quercus ilex PE... [more]
TPS1_CANSA4.277e-3647.53(-)-limonene synthase, chloroplastic OS=Cannabis s... [more]
SSS_SALOF3.065e-3447.47(+)-sabinene synthase, chloroplastic OS=Salvia off... [more]
CINS_ARATH4.143e-3146.391,8-cineole synthase, chloroplastic OS=Arabidopsis... [more]
TPS2_CANSA7.067e-3146.67(+)-alpha-pinene synthase, chloroplastic OS=Cannab... [more]
MYRS2_ARATH7.067e-3144.91Myrcene/ocimene synthase 2, chloroplastic OS=Arabi... [more]
MYRS1_ARATH5.983e-3044.24Myrcene/ocimene synthase 1, chloroplastic OS=Arabi... [more]
BPPS_SALOF1.801e-2643.13(+)-bornyl diphosphate synthase, chloroplastic OS=... [more]
SCS_SALOF1.168e-2542.761,8-cineole synthase, chloroplastic OS=Salvia offi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_05C02_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0005C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620304 ID=DN620304; Name=DN620304; organism=Citrus sinensis; type=EST; length=803bp
CCCCCCCTTTTTTTTTTTTTTTTAGAATGAGCCTGACTTAAGTATTTGCA
TATACCTGAAGACTTTTATTCTCAATAAAAGTAACATATATATATATATA
TATATATATATATATATCATTTCTTTTTCATTTATAAACCTTGATGAATG
AGGGAATTTATTTTATTATCGAAAAGAGATCCCTCAGAAAAAAGAAAAGC
GGAGGCCAACATCAACTGAAACTGCACTCTCTGGGAATTCGCAACGCATC
GTGCATTATAATTCATCATCAGCCTTTGGTGCCAGGAGATGCTGTGAAAG
CCATGTCTTTGTCCTCCAAGGGAATGGGCTGAAAAAGCAATGTAAAGCCG
ACATCGATAGTCTCTTGGTTTTGAACACCATGCCCATCTCCATGTAGATA
CATAAAATGGGACATTCGCACAAGATTCAAGAGGAACTCAGCAGTTGTTC
GAGTCAAGGGAGAGTCTTTATCGGCTGTGTATGCATTCACCTTCTTCCAC
ATCTGTCTCATCATATCCTTGATGTGTTCACGAGCAACTTCCTCCGAGGC
ACCAGTTTCATGCATGTAACACTGGATTGATTTCGGAACATCCCCTCTCT
GTATCTCGTCCGATGAAGTTCCCAAATCATCTTGCAGACGGAAAATCTTG
GATGACCAGTGAACTATATCTGGATTACTTTCTAGAAATTCCAGTTCCTT
CTTAATGATTGGATTTGTACCAGAAAGATATGAAATCGTTATAATTAAAG
GGCCCGTTATTGATACCAATCCATTTTCCAAGTATTCTTCCAGTTTCGGT
GTG
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